PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0138s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 23298.3 Da PI: 10.254 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 12 | 57 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+++++ + +++G+g+W+ I+r + k+Rt+ q+ s+ qk+ SapurV1A.0138s0010.2.p 12 LPWTEEEHKKFLVGLQKMGKGDWRGISRNFVKTRTPTQVASHAQKH 57 69******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.829 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.71E-16 | 9 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 10 | 60 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.9E-15 | 11 | 60 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 13 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-12 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-10 | 13 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MIILSLFYET GLPWTEEEHK KFLVGLQKMG KGDWRGISRN FVKTRTPTQV ASHAQKHFNR 60 NSSLNRRRRR SSLFDITTDM VTEAPMEEQQ APCQDSKSSN QAPRSNPPLQ ANRTTSFPVR 120 TASPAVLPLQ IESPAMENRS LGQGKQSLNY STNLVLTAPC TSALPDLNLN LKPIADSYPL 180 SSSDQGGSSS RHSTLQTMAS LKNGDNIIIV A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0138s0010.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216684 | 2e-89 | AC216684.1 Populus trichocarpa clone POP030-A02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042641.1 | 1e-100 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 3e-41 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2K1YAB4 | 2e-97 | A0A2K1YAB4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s07560.1 | 4e-98 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 2e-32 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0138s0010.2.p |
Publications ? help Back to Top | |||
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