PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0138s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 294aa MW: 31823.4 Da PI: 9.4335

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0138s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	7.7e-15	94	139	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+++++ + +++G+g+W+ I+r + k+Rt+ q+ s+ qk+ SapurV1A.0138s0010.1.p 94 LPWTEEEHKKFLVGLQKMGKGDWRGISRNFVKTRTPTQVASHAQKH 139 69******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.009	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	1.64E-16	89	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-15	91	142	IPR006447	Myb domain, plants
SMART	SM00717	7.0E-11	92	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-12	95	141	IPR009057	Homeodomain-like
CDD	cd00167	7.66E-10	95	140	No hit	No description
Pfam	PF00249	1.4E-11	95	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MVAGSSSTGS GGDGAAETKP KEIVLFGVRV VVDNMRKIVS LNNMNEYEHL NDNEEDEDAA 60 AGASAAVSGY KSADDTVHHS SSASERRSQR KRGLPWTEEE HKKFLVGLQK MGKGDWRGIS 120 RNFVKTRTPT QVASHAQKHF NRNSSLNRRR RRSSLFDITT DMVTEAPMEE QQAPCQDSKS 180 SNQAPRSNPP LQANRTTSFP VRTASPAVLP LQIESPAMEN RSLGQGKQSL NYSTNLVLTA 240 PCTSALPDLN LNLKPIADSY PLSSSDQGGS SSRHSTLQTM ASLKNGDNII IVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0138s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216684	1e-108	AC216684.1 Populus trichocarpa clone POP030-A02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042641.1	1e-154	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	5e-62	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2K1YAB4	1e-148	A0A2K1YAB4_POPTR; Uncharacterized protein
STRING	POPTR_0012s07560.1	1e-148	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	7e-46	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0138s0010.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]