PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0134s0420.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 475aa    MW: 54330.3 Da    PI: 4.5133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0134s0420.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-53171432128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             ppGfrFhPtdeelvv+yLk+k+ +k+l+l ++++evd+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkat
  SapurV1A.0134s0420.4.p  17 PPGFRFHPTDEELVVYYLKRKICKKRLKL-NIVREVDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKAT 102
                             8****************************.89**************96446788999****************************** PP

                     NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             gkd+ v++ ++++vglkktLvfy+grap+g +tdWvmhey++
  SapurV1A.0134s0420.4.p 103 GKDRIVVC-NSRNVGLKKTLVFYRGRAPNGDRTDWVMHEYTM 143
                             ********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-609166IPR003441NAC domain
PROSITE profilePS5100555.46216166IPR003441NAC domain
PfamPF023653.9E-2817142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MKVTTDSFLG ADDMAWPPGF RFHPTDEELV VYYLKRKICK KRLKLNIVRE VDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGLKKT  120
LVFYRGRAPN GDRTDWVMHE YTMDEEELKR CPNVQDYYAL YKVYKKSGAG PKNGEQYGAP  180
FKEEDWVDDE FPRVNGLVTP EIPVKQHIEA TLVDNFKLSA PLELPLNDFE EIIKQIGGEH  240
AFNGLQNNDF SCLQPQVNGE EEAQSTLVDP CFREFVCEPV GELTTSDQHC NKHTNFNFDK  300
SDTSTLRLHE APEVTSATNY EQAPQLNEGD FLEINDLIDP EPYLSNAEQP VENLQFDDFD  360
GLSEFEQYHD AAMFLRDLGP VDQEAVSHSF MHPYGCDMVN QVGYQSQPDS IINAVDYQLQ  420
QSNLVASQVD CDLQPQFFDA EQMNNHLWVH GQRSNMSAAS ESHNGIFFQS PPGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-501417215171NO APICAL MERISTEM PROTEIN
1ut4_B8e-501417215171NO APICAL MERISTEM PROTEIN
1ut7_A8e-501417215171NO APICAL MERISTEM PROTEIN
1ut7_B8e-501417215171NO APICAL MERISTEM PROTEIN
3swm_A1e-491417218174NAC domain-containing protein 19
3swm_B1e-491417218174NAC domain-containing protein 19
3swm_C1e-491417218174NAC domain-containing protein 19
3swm_D1e-491417218174NAC domain-containing protein 19
3swp_A1e-491417218174NAC domain-containing protein 19
3swp_B1e-491417218174NAC domain-containing protein 19
3swp_C1e-491417218174NAC domain-containing protein 19
3swp_D1e-491417218174NAC domain-containing protein 19
4dul_A8e-501417215171NAC domain-containing protein 19
4dul_B8e-501417215171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443KRKICKKRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0134s0420.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302150.10.0NAC domain-containing protein 17 isoform X2
SwissprotQ9XIC51e-125NAC17_ARATH; NAC domain-containing protein 17
TrEMBLB9GT490.0B9GT49_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-117NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]