PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0131s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 465aa MW: 52454.7 Da PI: 6.8937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.6e-51 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wk SapurV1A.0131s0060.1.p 16 VPPGFRFHPTEEELLHYYLRKKVAYERIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWK 101 69****************************.9***************964444222455**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl SapurV1A.0131s0060.1.p 102 ATGRDKIIYS-GFKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144 **********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-57 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.308 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MPDDMVNLSI NGQSQVPPGF RFHPTEEELL HYYLRKKVAY ERIDLDVIRE VDLNKLEPWD 60 IQEKCKIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKIIY SGFKRIGLRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDSTHE TNVSNPIGEA VPEEGWVVCR VFRKKNYQKT 180 LESPKGSSSS LDSKAHQILG SGNEGVLDQI LMYMGRTCKM ENETLNSMNI SNNSNNSSLR 240 FLSEGLHERF MHLPRLDSPT LPPIPISSPC FDQDRNFKYS CYPQSYDDML TENEPSSPNQ 300 VGNGTFDMSS SSMTHDSKSG QLNDWATLDR LVASQLNGHG VETSKQLSCF NSDPNASFGL 360 SPDDEMQLSH LQHSHGSPNI QANSSHVYSN ENDLWSFTKS SSPSSSSDPL CHLSLIEVLP 420 KFVNHIEKAS RGNYSTELTL TLCWGRPKLA QMIIPTCHGD IGKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-47 | 12 | 176 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0131s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ215847 | 0.0 | HQ215847.1 Populus trichocarpa wood-associated NAC domain transcription factor 1A (WND1A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317059.1 | 0.0 | NAC domain-containing protein 43 isoform X2 | ||||
Swissprot | Q84WP6 | 1e-115 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A9PDI0 | 0.0 | A9PDI0_POPTR; NAC family protein | ||||
STRING | POPTR_0011s15640.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-100 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0131s0060.1.p |