PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0123s0250.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 247aa MW: 28089.1 Da PI: 10.3193

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0123s0250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.9	2.9e-38	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWk 84 lp G+rFhPtdeelvv+yLk+kv g +l++ +vi+e+d+++++Pw+Lp ++ +++ yfFs+++ + g++ +r++ sgyWk SapurV1A.0123s0250.1.p 14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-SVIPEFDVFQTDPWSLPGNL---KEKRYFFSQKKLND-FGTKCKRSAGsipSGYWK 95 699*************************.99***********544...45789987765.5677777433344** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gk k+++++ +++ vg++ktLvf + ++++ ++t+Wvmhey l SapurV1A.0123s0250.1.p 96 PIGKGKQIVASgSRQPVGMRKTLVFRERNHSSKTRTQWVMHEYYL 140 *****9956677******9999999********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-42	11	165	IPR003441	NAC domain
PROSITE profile	PS51005	43.146	14	165	IPR003441	NAC domain
Pfam	PF02365	2.6E-24	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MERPNFVENG GLRLPIGYRF HPTDEELVVH YLKRKVLGLP LPASVIPEFD VFQTDPWSLP 60 GNLKEKRYFF SQKKLNDFGT KCKRSAGSIP SGYWKPIGKG KQIVASGSRQ PVGMRKTLVF 120 RERNHSSKTR TQWVMHEYYL VGLPTDPKTT QMKVGDWVAS SIFHRKRKPK NHVVMISNPS 180 NINKTQNVEI ISPSFMDFMM EQSSDEPGAP SQCSSGVTEV SSNEFDQEEI SSFISRFSNP 240 CKRKRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	12	166	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-27	12	166	18	169	NAC domain-containing protein 19
3swm_B	2e-27	12	166	18	169	NAC domain-containing protein 19
3swm_C	2e-27	12	166	18	169	NAC domain-containing protein 19
3swm_D	2e-27	12	166	18	169	NAC domain-containing protein 19
3swp_A	2e-27	12	166	18	169	NAC domain-containing protein 19
3swp_B	2e-27	12	166	18	169	NAC domain-containing protein 19
3swp_C	2e-27	12	166	18	169	NAC domain-containing protein 19
3swp_D	2e-27	12	166	18	169	NAC domain-containing protein 19
4dul_A	2e-27	12	166	15	166	NAC domain-containing protein 19
4dul_B	2e-27	12	166	15	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0123s0250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298652.2	1e-174	NAC domain-containing protein 83
TrEMBL	B9GF72	1e-173	B9GF72_POPTR; NAC family protein
STRING	POPTR_0001s33260.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-50	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	SapurV1A.0123s0250.1.p