PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0123s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 410aa    MW: 44406.3 Da    PI: 5.9091
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0123s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.22.3e-5723239874251
                    GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                             + ++  +++     sP++kf+h+taNqaI ea+e+ee vH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++e
  SapurV1A.0123s0140.1.p 232 TFTTKRSTSSSKAFSPYVKFAHFTANQAIFEAFETEELVHVIDLDILQGYQWPAIMQALAARPGGAPFLRITGVGS----SMENVKE 314
                             222333344466789*************************************************************....******* PP

                    GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                             tg+ La++A++l+vp+e+++ va++l dl++++++ + gEalaVn+v +lhr++    +l     ++L ++++  P++v+vveqea+
  SapurV1A.0123s0140.1.p 315 TGRCLAELAHSLHVPLEYHP-VAEELVDLKPHMFNRRVGEALAVNSVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTVVEQEAS 394
                             ********************.7*******************************9..44444....5********************* PP

                    GRAS 248 hnse 251
                             hn++
  SapurV1A.0123s0140.1.p 395 HNEK 398
                             *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.332130409IPR005202Transcription factor GRAS
PfamPF035148.0E-55232398IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MHGQSLSGCS PPRYLSQLGA AFSSIHKGKG QSPPHRMCNS PNNQFMQVES LSLQGIEDFL  60
DDFQRDGYGG GYQQPPKMSG SGGSSTQLFD ISTTVPAMLD CLTIQNPSRF CTGSVSETSS  120
GSLATQESDI YQMGSVGTAP SSQKLLQENQ QEQQQQVQPL PLPATPPQPP PTTQSLQQQP  180
QSLNHTLMVS LPLGSEQEQV SGLQLLNLLL ACAEAISILF VCFCVTKTNT ETFTTKRSTS  240
SSKAFSPYVK FAHFTANQAI FEAFETEELV HVIDLDILQG YQWPAIMQAL AARPGGAPFL  300
RITGVGSSME NVKETGRCLA ELAHSLHVPL EYHPVAEELV DLKPHMFNRR VGEALAVNSV  360
NRLHRVPGNC LGNLLAMIRD QAPNIVTVVE QEASHNEKIA ILAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-40244395104255Protein SCARECROW
5b3h_A3e-40244395103254Protein SCARECROW
5b3h_D3e-40244395103254Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0123s0140.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298647.10.0scarecrow-like protein 21
RefseqXP_024438917.10.0scarecrow-like protein 21
RefseqXP_024438924.10.0scarecrow-like protein 21
SwissprotG7L1661e-135RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9GF630.0B9GF63_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-42RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]