PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0120s0410.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 255aa    MW: 29095.8 Da    PI: 7.9301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0120s0410.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.23.1e-14170195126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +ktelC+ +++tG C yG++C+FaHg
  SapurV1A.0120s0410.2.p 170 FKTELCNKWQETGACLYGNQCQFAHG 195
                             79***********************8 PP
2zf-CCCH19.91.3e-06208232125
                             --S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                             ykte C+  +++ +C+yG rC+F H
  SapurV1A.0120s0410.2.p 208 YKTEVCKMVLAGDICPYGHRCHFRH 232
                             9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-17166202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-11167201IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047169197IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10170195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-9203238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11203236IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784207235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQQDQINRSA LCLARLREVT FEMKYLRQEN ADLRSINREL NNQLIVLIQA SLHKQNNDST  60
RTPFDIDSGF HNLCNISSGG GHDMCEEDDS PTSVMEAGGD CGERISLHKG ISVRFNSYSK  120
WNQEQAASAS VTRAITRPRT PSPPNTEKVY ERRGKKEESP ELEVYSQGMF KTELCNKWQE  180
TGACLYGNQC QFAHGIEELR PVIRHPRYKT EVCKMVLAGD ICPYGHRCHF RHALTEQDRL  240
FLSHIKPREI KPGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-21170236470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0120s0410.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038731.11e-157PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-71C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3N7GEV21e-153A0A3N7GEV2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12860.11e-153(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-75C3H family protein