PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0118s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 27216.6 Da PI: 10.3968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 63 | 113 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+ta eAaka+++a+++++g+ SapurV1A.0118s0170.1.p 63 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVEAAKAYDKAAREYRGA 113 69*******.**********8...557**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.46E-27 | 63 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 63 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 63 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 63 | 120 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-13 | 63 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-32 | 63 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVTTRLFVQR YSRDASSRRH GRIYFSIVSS SGFRKMAPRK DNIDNGNCSL KKASGDHDKK 60 EIHYRGVRKR PWGRYAAEIR DPGKKTRVWL GTFDTAVEAA KAYDKAAREY RGAKANTNFA 120 LAEKVVYYND EKQSSSQSST VESSSSPVVS AVARDATHQV GGVMGMGRFP FVLQQQQPNV 180 NAVGPVWFLD SVKPELVAQR FPVRFDPVGL EGGAQSDSDS SSVIDFKPRR SIRDLDLNLP 240 PPADA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 63 | 121 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 60 | 121 | 2 | 64 | ATERF1 |
3gcc_A | 1e-19 | 60 | 121 | 2 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0118s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310408.2 | 1e-106 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3N7FDB1 | 1e-105 | A0A3N7FDB1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01110.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-33 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0118s0170.1.p |