PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0117s0370.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 305aa    MW: 33721.7 Da    PI: 6.6697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0117s0370.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.64e-072471354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              +  rE+ RRdr+ + f eL   l ++     ++++Ka+iL  +++ +k+L
  SapurV1A.0117s0370.2.p 24 IQKADREKLRRDRLTEHFVELGNTLDPD----RPRNDKATILADTIQLLKDL 71
                            56789********************997....799**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-122190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8392171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-52275No hitNo description
Gene3DG3DSA:4.10.280.106.0E-102293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-52471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-52777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MCIGVYFSLH THFYFLDSVS ARKIQKADRE KLRRDRLTEH FVELGNTLDP DRPRNDKATI  60
LADTIQLLKD LTSQVDKLKA EYATLSEESL ELTQEKNDLR EEKASLKLDI DNLNIQCQQR  120
LRAPYPWPAM NHSVMMVPPS YPFPMPVPMP PGAISLHSPI QPCPFFGNQN PAIIHNSCST  180
YVPCMAPNNL VDQQSAQHVS SLSQPASRSH VSGKQDPKNK SSGECKIEKS EGSDDVSTDL  240
ELKTPGSTAD QDLSPGQRKS KKSQRKESSV TEWSSSSRCS SSPSVQDSSH NSAVGGTKHD  300
DLDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0117s0370.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2309104e-73CU230910.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384545.11e-158transcription factor bHLH121
RefseqXP_024454652.11e-158transcription factor bHLH121
RefseqXP_024454653.11e-158transcription factor bHLH121
SwissprotQ9LT231e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLB9H1511e-157B9H151_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17540.31e-157(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-76bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]