PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0110s0180.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 327aa    MW: 34977.5 Da    PI: 6.3092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0110s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09175219554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             h+++Er RR ri ++   L+el+P++      K + a++L + v+Y+k L
  SapurV1A.0110s0180.2.p 175 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 219
                             99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-14168230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-10168224No hitNo description
PROSITE profilePS5088815.783170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA VQPPGYGGGG GEVMGLQLGS YAGNVGLMRS NADNNMGMMP  60
LGLNLEHHGF LRQQQADDSS SSLDTNNSNN INNTCPSITS AGILGRDSVH MTSLFPTFGH  120
LQIHSSIRPT PPPPRPPQIH QINSHQNPGA VSAVPQPPGI RPRVRARRGQ ATDPHSIAER  180
LRRVRITERV KALQELVPTC NKTDRAAMLD EIVDYVKFLK LQVKVLNMSR LGAAGAVAQL  240
VADVPLLSVQ GEGNEGGATQ ESWENWSNDG TEQEVAKLME EDVGAAMQFL QSKALCIMPI  300
SLASAIFRAR SPNALTLINT ESNTPS*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0110s0180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375871e-100AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439434.10.0transcription factor UNE12 isoform X2
SwissprotO227684e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4KKU00.0A0A2I4KKU0_POPTR; BHLH family protein
STRINGPOPTR_0005s05500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]