PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0105s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 508aa    MW: 55929.1 Da    PI: 5.8706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0105s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.85.3e-1011145001374
                    GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvs....elykalppsetsekn....... 73 
                             lv+lL+++Aea++   ++  la+ +L rl+el+sp++ ++m+Rlaa+ft AL+  l +s+s    +  + ++  +    +       
  SapurV1A.0105s0110.1.p 114 LVHLLMAAAEALTGlnKNRDLARVILVRLKELVSPNDgTNMERLAAHFTDALQGLLEGSGSirghKHLSVINNGPY---Hhhhrddp 197
                             68**********98446667************8887669*****************99654222222222222222...12224458 PP

                    GRAS  74 ...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg.. 153
                                +s++laa++l++++sP++kf+h+taNqaIleav+ ++r+Hi+D+di++G+QW +L+qaL +R++gpp  +lRiT++++  +g  
  SapurV1A.0105s0110.1.p 198 phhQSDVLAAFQLLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWSSLMQALVTRKDGPPapHLRITALSRGGNGrr 284
                             8889**************************************************************776555*********888898 PP

                    GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                             s  +++etg+rL  fA+++g pf+f+    ++ e++++++L++ +gEal+ n++lql ++  +    +   +++++  k+l+P+++ 
  SapurV1A.0105s0110.1.p 285 SIGTVQETGRRLLAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEALVMNCMLQLPHFSYRA---PGSVTSFISGAKTLNPRLIA 368
                             999************************9999***************************998444...334458************** PP

                    GRAS 241 vveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                             +ve+e+ + +++ F+ rf+++l++ysa++dslea++p + ++r+ vEr++lg++i   +a   ++   r e+   W+e+l  +GF+p
  SapurV1A.0105s0110.1.p 369 MVEEEVGTvGDGGFVSRFMDSLHHYSAFYDSLEAGFPMQGRARALVERVFLGPRIAGSLARIYRA---RGEEGCPWEEWLAVVGFQP 452
                             *****9999*******************************************************9...888889************* PP

                    GRAS 327 vplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                             v++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  SapurV1A.0105s0110.1.p 453 VKISFANHCQAKLLLGLFN-DGYRVEELaSNRLVLGWKSRRLLSASIWT 500
                             *******************.******876999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.50988480IPR005202Transcription factor GRAS
PfamPF035141.8E-98114500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAMAIDGTEF ELDFSSYSST TTTTTTTTTA TPATSTENDH GCNWNDWSPM VDWEALSGAH  60
DDFQDLIDSM MDDGALMNQG IRLTPDTSNS MSTSDTLLVD EETSCSDDLK GLRLVHLLMA  120
AAEALTGLNK NRDLARVILV RLKELVSPND GTNMERLAAH FTDALQGLLE GSGSIRGHKH  180
LSVINNGPYH HHHRDDPPHH QSDVLAAFQL LQDMSPYVKF GHFTANQAIL EAVADDRRIH  240
IVDYDIMEGI QWSSLMQALV TRKDGPPAPH LRITALSRGG NGRRSIGTVQ ETGRRLLAFA  300
ASIGQPFSFH QCRLDSDETF RPSALKLVRG EALVMNCMLQ LPHFSYRAPG SVTSFISGAK  360
TLNPRLIAMV EEEVGTVGDG GFVSRFMDSL HHYSAFYDSL EAGFPMQGRA RALVERVFLG  420
PRIAGSLARI YRARGEEGCP WEEWLAVVGF QPVKISFANH CQAKLLLGLF NDGYRVEELA  480
SNRLVLGWKS RRLLSASIWT SPSDPDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5112250327382Protein SCARECROW
5b3h_A7e-5112250326381Protein SCARECROW
5b3h_D7e-5112250326381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0105s0110.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306621.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K2AI350.0A0A2K2AI35_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]