PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0620.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 268aa    MW: 29248 Da    PI: 8.2277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17137187255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++Ae rdp +ng  +r++lg++ ta+eAa a+++a+ +++g
  SapurV1A.0094s0620.1.p 137 HYRGVRQRP-WGKFAAETRDPAKNG--ARVWLGTYETAKEAALAYDRAAYRMRG 187
                             7********.**********99987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30136196IPR001471AP2/ERF domain
PROSITE profilePS5103223.261137195IPR001471AP2/ERF domain
CDDcd000181.82E-29137196No hitNo description
SMARTSM003802.8E-34137201IPR001471AP2/ERF domain
PfamPF008471.2E-13137187IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22137197IPR016177DNA-binding domain
PRINTSPR003671.8E-13138149IPR001471AP2/ERF domain
PRINTSPR003671.8E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNEISSLCEF SALYHHHQHR SPSFNSLISC LNETWGDLPL KVDDSEDMVI YNFLRDAVSS  60
GWSPVDLSSS TATSSSSSSS SSTTTTTTTT TTIIANVVKA EPKDEPDLEA DPIKLVQESS  120
LNMEAVVTKK VVTKGRHYRG VRQRPWGKFA AETRDPAKNG ARVWLGTYET AKEAALAYDR  180
AAYRMRGSKA LLNFPHKIGS NEPDPVRITA KRRQPDTGLT AVDTGSAKMR KMLVVEGAEL  240
ERGVGYNMFQ VGPHKGLMPV GEQLLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-37134202270ATERF1
3gcc_A5e-37134202270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0620.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2289181e-139CU228918.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297926.11e-167ethylene-responsive transcription factor 2
SwissprotQ404796e-88ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLB9GK351e-166B9GK35_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11770.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-60ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]