PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0091s0380.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 205aa MW: 22560.4 Da PI: 8.6243

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0091s0380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	100.4	3.2e-31	9	75	4	73
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaask 73 g+++Cq+CGnqakkdCa++RCRtCC+s+gf+C+thvkstWvpa krr+r q+l ++++ + + ++k SapurV1A.0091s0380.1.p 9 GGSRCQECGNQAKKDCAYMRCRTCCNSKGFQCQTHVKSTWVPACKRRQRAQNLLPIQQQQVQGH---NPK 75 6789*********************************************988888777665543...222 PP
2	DUF702	75.2	1.9e-23	71	139	86	154
DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ k +++++ le++++P+ev+s+ frc rvss+d++ +++aYqt+v+igG vfkGiLydqG++e SapurV1A.0091s0380.1.p 71 GHNPKRRRENPSAGLEIENFPAEVNSTVTFRCFRVSSIDESIDQFAYQTSVNIGGRVFKGILYDQGPHE 139 4455556677888999999***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.1E-53	10	138	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.7E-25	13	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-21	90	137	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MIRQGCDLGG SRCQECGNQA KKDCAYMRCR TCCNSKGFQC QTHVKSTWVP ACKRRQRAQN 60 LLPIQQQQVQ GHNPKRRREN PSAGLEIENF PAEVNSTVTF RCFRVSSIDE SIDQFAYQTS 120 VNIGGRVFKG ILYDQGPHES CYYFGESSSR QLHEPHLPSA DALITRPGTL ASASGAAESL 180 APPSYPFPLA ASMSGTQLFL HPKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0091s0380.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455062.1	1e-125	protein SHORT INTERNODES
Refseq	XP_024455063.1	1e-125	protein SHORT INTERNODES
Swissprot	Q9XGX0	2e-54	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A3N7ETW4	1e-123	A0A3N7ETW4_POPTR; Uncharacterized protein
STRING	POPTR_0004s16770.1	1e-121	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	9e-49	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	SapurV1A.0091s0380.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]