PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0090s0770.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 273aa MW: 31132.3 Da PI: 9.3367

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0090s0770.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48	2.3e-15	127	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v+ +l lp +f+++h + ++tlede+g + e k+ k++ l++GW++F +++L +gD +vF+l+ SapurV1A.0090s0770.1.p 127 FVKPMLQSHVTGGFWLGLPFPFCKAHlpL----YDEMITLEDENGDESETKYLAAKHG----LSGGWRGFSIDHELVDGDALVFQLV 205 89**********************742....3348***********555555....*********************99 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + ++f +v ++r SapurV1A.0090s0770.1.p 206 SPTKF--KVYIVR 216 86666..888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-18	120	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-23	121	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.38E-26	125	216	No hit	No description
Pfam	PF02362	1.9E-13	127	216	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-21	127	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.476	127	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVKPKQTYEE IRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKAKLRIS RSPGALTPVR 60 RSNRVADKPP VSYKEVPIEP VERTGRIRSY QRRDLLNRVY ASDEVRIYAV HRADQMQSSL 120 GADFPSFVKP MLQSHVTGGF WLGLPFPFCK AHLPLYDEMI TLEDENGDES ETKYLAAKHG 180 LSGGWRGFSI DHELVDGDAL VFQLVSPTKF KVYIVRAYDS EDNEDQENTK DDECKDNTEK 240 KEDKGKIEEN GKVSDAPDLS GRYPKRIRAG KK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0090s0770.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313112.2	1e-176	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	2e-88	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	B9HRZ6	1e-174	B9HRZ6_POPTR; Uncharacterized protein
STRING	POPTR_0009s10590.1	1e-175	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-74	B3 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0090s0770.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]