PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0090s0760.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 263aa MW: 29995.8 Da PI: 9.7831 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.7e-16 | 125 | 213 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ +l lp f+++h + ++ +tlede+g +++ k+ +k++ l++GW++F +++L +gD +vF+l++ SapurV1A.0090s0760.3.p 125 FLKPMVQSHVSGCFWLGLPAYFCKSHlPL---SDEVMTLEDENGDEFQTKYLAQKTG----LSGGWRGFSIEHELVDGDALVFQLVS 204 89************************633...3447***************444444....***********************998 PP SSEE..EEEEE CS B3 87 rsefelvvkvf 97 ++f +v + SapurV1A.0090s0760.3.p 205 PTRF--KVYIA 213 6777..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-19 | 120 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-22 | 120 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.72E-25 | 123 | 214 | No hit | No description |
Pfam | PF02362 | 1.9E-14 | 125 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-20 | 125 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAKSKQTYEE IRQKRMEENK KRMKELNLTK LSQSLLSKPS PVKKAKPRTF RQATALTPVR 60 RSTRVADKPT VSYKELPVEP MERTRRSYSY RRRGFGDYAS SEARAHAIDK AEQIQSRLGA 120 DFPSFLKPMV QSHVSGCFWL GLPAYFCKSH LPLSDEVMTL EDENGDEFQT KYLAQKTGLS 180 GGWRGFSIEH ELVDGDALVF QLVSPTRFKV YIARAYDSED NENKEDMVED NEGKENTDND 240 KNSDSKHLDG IAKRTRAKSR VS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0090s0760.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379203.1 | 1e-171 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 1e-79 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | U5G0R3 | 1e-169 | U5G0R3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s10600.1 | 1e-170 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 9e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0090s0760.3.p |
Publications ? help Back to Top | |||
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