PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0740.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 338aa    MW: 38320.1 Da    PI: 4.8582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0740.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-142702197
                            HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                      B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                            +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f  +v ++
  SapurV1A.0090s0740.4.p  2 RFCKMHL-PK-NDTTIFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKPSRF--KVYIV 70
                            6998884.33.5679***************4444....55************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.422173IPR003340B3 DNA binding domain
CDDcd100177.30E-18271No hitNo description
PfamPF023623.3E-12270IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-17272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-16273IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-7373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRFCKMHLPK NDTTIFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH EGDVLVFHLV  60
KPSRFKVYIV KGNGSSQGDG EFGIPNSEPA EKDVKGSKKA ELLELLPVGH QEENNQENGL  120
IAEENNKGYV ANQSENESEE RASETLRVIK LSGSTVDFNN VKGIENFSIL LNGFSIDSEL  180
SEHHRTRYYE LCRSQKSFLH SNLLNSINHN LAVEIIIGTV DISEGIKSSK LSSSQADYGV  240
WDKTLKGFEL FGMKVGFLRE RLSRLMSLAL ESEEAMESEC REVRLEQVRV DEEMKSLELR  300
LLKLKETRER LDDEMEILKE NAEKHEHMFQ EAVNAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0740.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295033e-86CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463707.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K1Z5T10.0A0A2K1Z5T1_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-18B3 family protein