PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0740.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 347aa    MW: 39190.1 Da    PI: 4.867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0740.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-142702197
                            HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                      B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                            +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f  +v ++
  SapurV1A.0090s0740.3.p  2 RFCKMHL-PK-NDTTIFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKPSRF--KVYIV 70
                            6998884.33.5679***************4444....55************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.422173IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-17272IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-18271No hitNo description
PfamPF023623.4E-12270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16273IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-7373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRFCKMHLPK NDTTIFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH EGDVLVFHLV  60
KPSRFKVYIV KGNGSSQGDG EFGIPNSGAN GKEIISEPAE KDVKGSKKAE LLELLPVGHQ  120
EENNQENGLI AEENNKGYVA NQSENESEER ASETLRVIKL SGSTVDFNNV KGIENFSILL  180
NGFSIDSELS EHHRTRYYEL CRSQKSFLHS NLLNSINHNL AVEIIIGTVD ISEGIKSSKL  240
SSSQADYGVW DKTLKGFELF GMKVGFLRER LSRLMSLALE SEEAMESECR EVRLEQVRVD  300
EEMKSLELRL LKLKETRERL DDEMEILKEN AEKHEHMFQE AVNAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0740.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295033e-86CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313110.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLB9HRZ40.0B9HRZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-18B3 family protein