PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0089s0170.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33343.5 Da PI: 6.9581 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 5.1e-34 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl SapurV1A.0089s0170.3.p 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 18 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-18 | 20 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 20 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 107 | 153 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MTMDPINGGK SLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG 60 LTIYHVKSHL QKYRLAKYLP DSTSDGKKVD KKETGDMLSN LDGPSGMQIT EALKLQMEVQ 120 KRLHEQLEVQ RQLQLRIEAQ GKYLKKIIEE QQRLSGVLED VPGSGVSAPV SGDNCPESDN 180 KTDPATPAPT SESSLQDKAT KECAPTKSLS IDGSFSSQHE PLTPDSRCNT DSPAESPRGE 240 RTMKKQRVSM GAAFGKPEMV LTHQILESSL NSYPQPHSAF LTREQFDPPS GLSMGNEDQS 300 EKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0089s0170.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373551.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024443124.1 | 0.0 | myb family transcription factor PHL7 isoform X3 | ||||
Swissprot | Q9SJW0 | 1e-135 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2I4KK58 | 0.0 | A0A2I4KK58_POPTR; G2-like family protein | ||||
TrEMBL | B9N3W8 | 0.0 | B9N3W8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s00310.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-121 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0089s0170.3.p |