PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0079s0550.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 457aa MW: 51580.3 Da PI: 8.8797 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 150.3 | 1.3e-46 | 118 | 274 | 3 | 136 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaess 78 ++kdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+ ikelt++ s++s+s + ++e++ SapurV1A.0079s0550.1.p 118 TGKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvprvrrrcsiSADSKSVSsTSERE 204 68*************************************************************777766654422222111211222 PP TCP 79 sssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 ++ +++k+k+s+k ++ + nl + +sr+karararertre+m+++ + SapurV1A.0079s0550.1.p 205 ---------VvsgikppetdgdkrgaeakkDSLVTNPKEKRSKKVHKPVFNLVDrDSREKARARARERTRERMKNQGTD 274 .........1233334444566677777765555555666666666666888888********************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-45 | 118 | 270 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.214 | 119 | 177 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.374 | 250 | 267 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MFSSSSSFSP FDQYANHTMV ASMENPSSIE SCSQTFLRHF PDLFLDDNDL LVGELLSQQQ 60 QQQQQQQQEV LGSNTALAAE ANDPHTIPSA SNEEAKINNK KKKSNVDTSK QRIRQRRTGK 120 DRHSKIHTAQ GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFTKS KAGIKELTDS 180 VPRVRRRCSI SADSKSVSST SEREVVSGIK PPETDGDKRG AEAKKDSLVT NPKEKRSKKV 240 HKPVFNLVDR DSREKARARA RERTRERMKN QGTDTSSDRS SQANPNSLEK FESSSPLEYG 300 ENLASVNREM KSPVKVSEVK ESSNHGLLRD QMDYVSIAGN FYGITNSPRS FSMCDFSESV 360 EFLPGGTNCK DEFPGFPVNW DMTNDRIRYK YNALTNMKLP PLNAHEESPN SFFMNMPNPD 420 DQNSISILMT TATNANQSSS NSFFVEDHYD CLYRSA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 268 | RARARERTRERMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0079s0550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149481 | 0.0 | AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312378.2 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | Q9FUE7 | 0.0 | Q9FUE7_POPDE; Teosinte-branched-like protein | ||||
STRING | POPTR_0008s11470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-31 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0079s0550.1.p |