PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0079s0150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 27153.9 Da PI: 8.1517 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.5e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ +++l++a +++ r+++++sl+yeA+ r+ +PvyG+vg++++ SapurV1A.0079s0150.1.p 4 SCNGCRVLRKGCSDSCNLRPCLqwiktPDSQANATLFLAKFYGRAGLINLIEAGHPKLRQAIFRSLLYEACGRIVNPVYGSVGMLWS 90 6************************************************************************************** PP DUF260 83 lqqqleqlkaelallke 99 +++ +q++++++l ++ SapurV1A.0079s0150.1.p 91 GNWAQCQAAVDAVLKGS 107 *********99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.313 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSDSCN LRPCLQWIKT PDSQANATLF LAKFYGRAGL INLIEAGHPK 60 LRQAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAQCQAAV DAVLKGSPIM SLPSTSEVPA 120 PHLISSLNTY DIRHVSRDQE CSPGLTKVKN QTRFKRSVTT RPNSQTEPTR QDKPVEWVFE 180 PARESCLHHL GKGDSYIKDE ESIFSVETVE GSLWSHLGPD RVFKFNGQSD GNDVSLDLTL 240 GLVSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0079s0150.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312397.2 | 1e-152 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 6e-70 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A2K1ZFW6 | 1e-151 | A0A2K1ZFW6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11950.1 | 1e-152 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 3e-72 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0079s0150.1.p |