PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0078s0410.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 27030.7 Da PI: 7.0745 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.4 | 1.1e-28 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C +C+vlr++C+++C+++p++ ++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +PvyG+vg++++ SapurV1A.0078s0410.1.p 4 SCHGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAGPQRLRPAIFRSLLYEACGRIVNPVYGSVGMLWS 90 6*********************9998777889******************************************************* PP DUF260 83 lqqqleqlkaelall 97 +++ +q++++++l SapurV1A.0078s0410.1.p 91 GNWAECQAAVDAVLK 105 ********9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.793 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRMSCHGCRV LRKGCNDNCT IRPCLQWIKS TDSQANATLF LAKFYGRAGL INLIEAGPQR 60 LRPAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAECQAAV DAVLKGLPIV STPSSSDVPA 120 PHLISSLNTH DIRHVSRHQN SPELRKVKSR TRFKRSMPNS LAEPTVRLNP EELGFEPVRE 180 PWPGHLGNGD SYIKDEDSIL ATDETVEDSL WSRVEPEQVF KFNRQSDDSD LSLELTLALV 240 SE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0078s0410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314861.3 | 1e-149 | LOB domain-containing protein 41 | ||||
Refseq | XP_011007889.1 | 1e-150 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 7e-75 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | B9HWH6 | 1e-150 | B9HWH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13480.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 6e-77 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0078s0410.1.p |