PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0074s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 447aa    MW: 48757.4 Da    PI: 6.7642
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0074s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-32260313255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  SapurV1A.0074s0260.1.p 260 PRMRWTSSLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 313
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15257314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28258314IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-24260313IPR006447Myb domain, plants
PfamPF002497.0E-7261312IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSQNGIFDQQ SLNLIPDLSL HISLPNSAPS SICSGTNDGD SGFDIWRKDD GVKSHSESSI  60
RVGSQADTEL SLANPTSTAA LEGESPWRKD YYGGRGTGCL EDHHRHDQAR QRNLLLQSSS  120
NGHTSHINHG ISVLDVSGLK PIKGIPVYNS WNSSGDYNID PRFSSNQMPY SPSCTPYSSS  180
NSSAYHHTSS FQAYRMGTSA PRFNGMSMES SLRVPQYQQY HQYGAAAGVR GGAAEVYGSG  240
GMIRSRFMPK LHSKRNMRAP RMRWTSSLHS RFVHAVELLG GHERATPKSV LELMDVKDLT  300
LAHVKSHLQM YRTVKSTDCR PAASSDGSGD EDFVSGTTCI SQNKSFLVNQ KGSSNELNLQ  360
HDNGCTDSPT TPWSNSSSKG GWMHSSSRDL DGLGEETLSS QQASGNKLEG VEFAESRSFP  420
GYNQELINPI LEFSLGRPDG QNEEHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-17261315357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17261315357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17261315357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17261315357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0074s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374240.20.0transcription repressor KAN1
TrEMBLA0A2K1XH990.0A0A2K1XH99_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.15e-52G2-like family protein