PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0073s0380.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CPP

Protein Properties

Length: 789aa MW: 86668.6 Da PI: 7.2387

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0073s0380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.2	9.3e-15	460	498	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k gCnCk+s C+kkYCeC++a++ C + C+Ce+CkN SapurV1A.0073s0380.1.p 460 RHKTGCNCKRSMCVKKYCECYQANVGCYNACRCEGCKNI 498 5899**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	18.559	407	500	IPR005172	CRC domain
SMART	SM01114	1.7E-13	460	501	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.3E-10	463	497	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MEGSSESVLC VLSRTGESPF SNFISKISPI KPVKAAHVAQ GLLGINSPPL VFTSPRAISD 60 RQTNFLRRFQ CPQISGPEIS KNDGRSKNSA DDPRDLRKCS TYLKSRLIVD VQKRNNINNS 120 EQHQPGSFSG CVDEYLSDPV DVDCADSVNL VSPNVKRSDD AHQSSESNLT NSKIDPKEQS 180 TSETKREKIE EEGNIVEQPS HVCPSFVSDL LVYHASRQQQ CDTSGAQAAP PHVDDGEDGE 240 TVLNGPVQLI THHGSEASQL QRGLSRRCLQ FDEAQQKTPM DGTYSLDSAT NLIELASSSS 300 KNQTMFVSKS SGFGLHLNSV VNTLPIGCSA SELIMSHHSV GYKISCSNLP NLVERVSSTA 360 GDGVLQTKVS NATGSAISES LRTNETLYKL QPPGHQVTLH NKRRFRCFNR PEYEDTVLDT 420 RQQKESHNPL AFAPKIVQHV TEFHAINVED AGLFMPSTGR HKTGCNCKRS MCVKKYCECY 480 QANVGCYNAC RCEGCKNIHG RKEEYGMTEE IVSNRANEER LESMADRKFK MIANNKFLHA 540 ELYDPRSLTP PTPSFDYSSH GKDAPKSRLL PGRYVLSSES DHSMLPSYSK STSSSSNSHG 600 NDKLHKTSKT LDVVSRSQEL DYSIIEIMGQ FSPQFDELAD SSDHTPLRNP SPITMASSSS 660 KMRDTAIISQ LRLYPGNGHL SSGGSLHWRS SPITPMTRFG ETKTQDSGCG LYDIPEDDTP 720 EIFKESPTPV TSVKASSPLK KRVSPPHGRI QEFQSSSSAG LKSGLKSVPS FPPLTPCIDP 780 TDRTQQRN*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MEGSSESVLC VLSRTGESPF SNFISKISPI KPVKAAHVAQ GLLGINSPPL VFTSPRAISD  60
RQTNFLRRFQ CPQISGPEIS KNDGRSKNSA DDPRDLRKCS TYLKSRLIVD VQKRNNINNS  120
EQHQPGSFSG CVDEYLSDPV DVDCADSVNL VSPNVKRSDD AHQSSESNLT NSKIDPKEQS  180
TSETKREKIE EEGNIVEQPS HVCPSFVSDL LVYHASRQQQ CDTSGAQAAP PHVDDGEDGE  240
TVLNGPVQLI THHGSEASQL QRGLSRRCLQ FDEAQQKTPM DGTYSLDSAT NLIELASSSS  300
KNQTMFVSKS SGFGLHLNSV VNTLPIGCSA SELIMSHHSV GYKISCSNLP NLVERVSSTA  360
GDGVLQTKVS NATGSAISES LRTNETLYKL QPPGHQVTLH NKRRFRCFNR PEYEDTVLDT  420
RQQKESHNPL AFAPKIVQHV TEFHAINVED AGLFMPSTGR HKTGCNCKRS MCVKKYCECY  480
QANVGCYNAC RCEGCKNIHG RKEEYGMTEE IVSNRANEER LESMADRKFK MIANNKFLHA  540
ELYDPRSLTP PTPSFDYSSH GKDAPKSRLL PGRYVLSSES DHSMLPSYSK STSSSSNSHG  600
NDKLHKTSKT LDVVSRSQEL DYSIIEIMGQ FSPQFDELAD SSDHTPLRNP SPITMASSSS  660
KMRDTAIISQ LRLYPGNGHL SSGGSLHWRS SPITPMTRFG ETKTQDSGCG LYDIPEDDTP  720
EIFKESPTPV TSVKASSPLK KRVSPPHGRI QEFQSSSSAG LKSGLKSVPS FPPLTPCIDP  780
TDRTQQRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0073s0380.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020536556.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBL	B9RP78	0.0	B9RP78_RICCO; Tso1, putative
STRING	POPTR_0006s26740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-39	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0073s0380.1.p