PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0072s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 503aa    MW: 55303.8 Da    PI: 8.7006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0072s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007495116223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             +C+ Cgk F +   L  H+  H
  SapurV1A.0072s0060.1.p  95 VCKECGKGFQSLKALCGHMAFH 116
                             6******************988 PP
2zf-C2H212.40.00049440462123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp C+k+F++   L  H r+H
  SapurV1A.0072s0060.1.p 440 HECPFCPKVFRSGQALGGHKRSH 462
                             78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-5634No hitNo description
PROSITE profilePS501579.182936IPR007087Zinc finger, C2H2
PfamPF139120.0026927IPR007087Zinc finger, C2H2
SMARTSM003550.37931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.36994121IPR007087Zinc finger, C2H2
SMARTSM003550.3294116IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.7E-895116No hitNo description
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139121.5E-596118IPR007087Zinc finger, C2H2
SuperFamilySSF576678.7E-8435462No hitNo description
PfamPF139121.7E-9440462IPR007087Zinc finger, C2H2
SMARTSM003550.016440462IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18440467IPR007087Zinc finger, C2H2
PROSITE patternPS000280442462IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEANQKNNFV CKFCNKRYPC GKSLGGHIRI HLNANGTSST GEEAKVQVSK TENNRKQISV  60
SEAGCQSGYV LRAKPKKTSR FVADSSNTTT LPEKVCKECG KGFQSLKALC GHMAFHSKNY  120
FIDQSGTTEK LKEIVSDNQS DSETTDPSKP RRSKRMRYKT IDVYTTSISL ANAAALSSTS  180
GIEQEQEEVA KCLMMMSKDS GFKGCFSSLA DSSDNNSVVL EGKSSSTKMT INVNNGVNFV  240
SSGIESLEMK KSMQRGVVST ENDQSENSDS GYFAKGPQKV ESDDSVRGFA RNDEIKKCKV  300
EFGSSYDDDI DAESGKRLSR FRRVRTQLGK DFIEEDVHDQ VDRASMDSQK RCKNESSEFL  360
SSRRGKCVPH WGRRASHNKT NGCSDSMCES GENSVDTDYV PSPIPNSSKM VQSRTGKTPI  420
EQNSSGNAEK KLGLKKGKQH ECPFCPKVFR SGQALGGHKR SHFTEAARDR AVVIKQDVAE  480
ISMRVLIDLN LPVSVEEGAD AW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0072s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465639.10.0zinc finger protein ZAT9
TrEMBLA0A2K1YUV70.0A0A2K1YUV7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-82C2H2-like zinc finger protein