PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 278aa    MW: 30751.8 Da    PI: 5.0034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36351252101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y+i++d++l+++isw+e+g+sf+v+d++ f++++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++ F+k
  SapurV1A.0068s0200.1.p  35 FLTKTYKIVDDHTLDDVISWNEDGSSFIVWDPTLFSRDLLPKFFKHSNFSSFVRQLNTYGFKKVVADR---------WEFSNECFRK 112
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             gkk+ll++i+r+k
  SapurV1A.0068s0200.1.p 113 GKKNLLCDIQRRK 125
                             ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3727119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-5531124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-3332124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-183558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEPPLPVEKN SGETPTTPLA AAAGGETSRS LPTPFLTKTY KIVDDHTLDD VISWNEDGSS  60
FIVWDPTLFS RDLLPKFFKH SNFSSFVRQL NTYGFKKVVA DRWEFSNECF RKGKKNLLCD  120
IQRRKLVATV TQLVAEPAAV KVIKTSSNSS SDEQVVISTR SSTLGLSVEL LDENERLRKE  180
NVQLKGELTE MKSLCGNIFS LVSNFENLRE EEMKELDLLP MKEDGGAGVR IFGVEVGVKR  240
GREVSGDVED GMQLRLQQPG GEVKIEVNGS SPNGDIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-231812415129Heat shock factor protein 1
5d5v_B6e-231812415129Heat shock factor protein 1
5d5v_D6e-231812415129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140060.0KP014006.1 Populus simonii heat shock transcription factor B2a2 (HsfB2a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321902.21e-152heat stress transcription factor B-2a
SwissprotQ9SCW42e-77HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0N7DK221e-152A0A0N7DK22_9ROSI; Heat shock transcription factor B2a2
STRINGPOPTR_0015s13390.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-74heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]