PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 580aa    MW: 64832.3 Da    PI: 6.36
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.6e-2960144187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+ aL+++r++m+  +r ++lk+plWee+s+k++e g++rs+k+Ckek+en+ k++k++keg+ ++++++s  +++fd+lea
  SapurV1A.0066s0010.1.p  60 RWPRQETSALLKIRSDMDAVFRVSSLKGPLWEEISRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKS--YKFFDELEA 144
                             8********************************************************************9877776..******985 PP
2trihelix102.24.1e-32399484187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k ev+aLi++r +++ +++++ +k+plWe++s+ m++ g++r++k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyfdql+a
  SapurV1A.0066s0010.1.p 399 RWPKVEVQALINLRANLDIKYQENGAKGPLWEDISAGMKKIGYNRNAKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFDQLDA 484
                             8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.37553117IPR017877Myb-like domain
SMARTSM007170.01357119IPR001005SANT/Myb domain
CDDcd122039.79E-2459124No hitNo description
PfamPF138375.0E-2059144No hitNo description
SMARTSM007170.0083396458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-4398455IPR009057Homeodomain-like
CDDcd122032.42E-25398463No hitNo description
PROSITE profilePS500906.946398456IPR017877Myb-like domain
PfamPF138378.0E-22399485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MIGDSSVQAT SSDAAATEAR VVTEGGEGGG GGAFGSNSGE EDKNMGVDHE VSRMNYGANR  60
WPRQETSALL KIRSDMDAVF RVSSLKGPLW EEISRKLAEL GYHRSAKKCK EKFENVYKYH  120
KRTKEGRTGK SEGKSYKFFD ELEAFQSHPS HSTQPTQPPP KAQTASATIT TLPWTNNTAI  180
VSHGTVPSRT NPMDIMSPSI STPTNNHTIS PMPISSNPMN PSQNAYPSLQ NLTTNLLASS  240
SPSSTASDEV LEVSKKRKRE SNWKDFFKRL TRDVIKKQED LQEKFLETME KCERERMARE  300
EAWRMQEMAR INREHETLIQ ERSTAAAKDA AVVAFLQKIS GQQDSIQTQE IPQPTTAPAP  360
PPPQPLQLRA PPTSLAPVTK LEVPKRDNGD NFTVSSPSRW PKVEVQALIN LRANLDIKYQ  420
ENGAKGPLWE DISAGMKKIG YNRNAKRCKE KWENINKYFK KVKDSNKKRP EDSKTCPYFD  480
QLDALYKEKN KMEITVSSGN AVKPPSTMEP LIVRPEQQWY FQQAARPQTI IEDSERNINI  540
DYNIEDDDGD DGDTDEEEDE GGGFEVVANK SAPLVNGDE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3157820.0JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300920.20.0trihelix transcription factor GT-2
SwissprotQ391171e-148TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9GTJ10.0B9GTJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-115Trihelix family protein