PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0065s0580.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 324aa    MW: 36464.3 Da    PI: 6.1803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0065s0580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.2e-24131191259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             dDg++WrKYGqK++ ++++pr+Y+rCt++   +C+++k+v++ +e+p+++ +tY g+H+++
  SapurV1A.0065s0580.1.p 131 DDGHAWRKYGQKVILNAKYPRNYFRCTHKydqQCQATKQVQKIQEEPQLFRTTYYGHHTCK 191
                             8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-25115192IPR003657WRKY domain
SuperFamilySSF1182904.97E-24124191IPR003657WRKY domain
PROSITE profilePS5081119.83125188IPR003657WRKY domain
SMARTSM007747.7E-36130192IPR003657WRKY domain
PfamPF031062.6E-23131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNSSWHENFP SSRKKAMDEL LRGQESASQL KLVINQSIGF DESMFVEDLV KKVMNSFSSV  60
LYILNGGESD EVASQIPLVG SPCWDDRKTS KDSGESTGKS AAELKVKDRR GCYKRRKSVH  120
SRTYDSSTLT DDGHAWRKYG QKVILNAKYP RNYFRCTHKY DQQCQATKQV QKIQEEPQLF  180
RTTYYGHHTC KSLLKASQFV SDPSDHDSSI LISFNDSTGE HQVSKKPDNS LLATYQTVKQ  240
ECCNREDSMS MPSYDPATYY NNQGSSSDYL LSPADHDYMS RFDSGDVISG VNSSCTTSSH  300
SLDMDRIMIE SGDFDDGVFG FDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22131191969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0065s0580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323675.21e-178probable WRKY transcription factor 70
TrEMBLA0A2K1XFB71e-177A0A2K1XFB7_POPTR; WRKY family protein
STRINGPOPTR_0016s14490.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-42WRKY DNA-binding protein 70