PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0063s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 805aa    MW: 89342.4 Da    PI: 5.5107
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0063s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.2e-2188143156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t+ q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  SapurV1A.0063s0030.1.p  88 KKRYHRHTAAQIQEMEAMFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 143
                             688999***********************************************998 PP
2START1624.4e-512865111206
                             HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                   START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWde 74 
                             ela++ ++elvk+  a+ep+W +    eng+evl  +e ++               ++ea r+++vv+m++ +lv  +ld + +W e
  SapurV1A.0063s0030.1.p 286 ELALSSMDELVKMCHANEPLWIRNI--ENGKEVLNLEEHGRMfpwpsnlkqnsseTRTEATRDCAVVIMNSITLVDAFLDAN-KWME 369
                             578999*******************..**********99999****************************************.**** PP

                             T-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                   START  75 tla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpS 150
                              ++    +a+t++vi++g     g l+lm+aelq+lsplvp R+ +f+R+++q  ++g+w+ivd  +d   ++  ++s+   +++pS
  SapurV1A.0063s0030.1.p 370 LFPsivaRAKTVQVITPGisgasGSLHLMYAELQVLSPLVPtRETYFLRFCQQnVEEGTWAIVDFPLDRLHDNI-QPSFPLYRRHPS 455
                             **99999**********************************************99*****************98.67777777**** PP

                             EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             g++i++++ng+s+vtw+eh++ +++ +h+++ + v sg+a+ga++w+  lqrqce+
  SapurV1A.0063s0030.1.p 456 GCVIQDMPNGYSRVTWIEHAEIEEKPVHQIFSQYVYSGMAFGARRWLTVLQRQCER 511
                             ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-2076146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2381150IPR009057Homeodomain-like
PROSITE profilePS5007117.23285145IPR001356Homeobox domain
SMARTSM003891.1E-1986149IPR001356Homeobox domain
PfamPF000462.5E-1888143IPR001356Homeobox domain
CDDcd000864.28E-1988146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PROSITE profilePS5084843.544277514IPR002913START domain
SuperFamilySSF559616.59E-31279513No hitNo description
CDDcd088756.11E-114281510No hitNo description
PfamPF018521.6E-43286511IPR002913START domain
SMARTSM002341.3E-30286511IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-4367480IPR023393START-like domain
SuperFamilySSF559616.18E-18549770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MFGECQVMSN MGGNVVSSDN LYSSPIGNPN FSFMSSMPFH TFSPIIPKEE NGQVMRGKEE  60
MESGSGSEQL EDKSGNEQES SEQPPNKKKR YHRHTAAQIQ EMEAMFKECP HPDDKQRMRL  120
SQELGLKPRQ VKFWFQNRRT QMKAQQDRSD NIILRAENES LKNDNYRLQA ELRNLICPHC  180
GGQAMLGAIP FEELRLENAR LRDELERVGC MPSRYGGRPI HSMVPAPSFV PPSLDLDMNI  240
YSRPFPEYLG TCADMMPMSV PMLQEPSSFP EAGVVLMEEG KGLAMELALS SMDELVKMCH  300
ANEPLWIRNI ENGKEVLNLE EHGRMFPWPS NLKQNSSETR TEATRDCAVV IMNSITLVDA  360
FLDANKWMEL FPSIVARAKT VQVITPGISG ASGSLHLMYA ELQVLSPLVP TRETYFLRFC  420
QQNVEEGTWA IVDFPLDRLH DNIQPSFPLY RRHPSGCVIQ DMPNGYSRVT WIEHAEIEEK  480
PVHQIFSQYV YSGMAFGARR WLTVLQRQCE RVASLMARNI SDLGVIPSPE ARKNMMRLAQ  540
RMIRTFSLNI STSSGQSWTG LSDSYDDTVR ITTRKITEPG QPNGVILSAV STTWLPYPHY  600
QVFDFLRDEH RRSQLEVLSN GNALHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ  660
ECCTDQSGSL VVYTTVDVES IQLAMSGEDP SCIPLLPLGF VIVPVESSSA ISEGNSIPSN  720
SEDGNGHNNS GCLLTVGLQV LASTIPSAKL NLSSVTAINN HLCTTVNQIN AALSNGITAA  780
AATTTTSSCL DNGNIEPTAA PKQV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0063s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291828e-86GU129182.1 Populus deltoides transcription factor HEX (OCLHD) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303433.20.0homeobox-leucine zipper protein HDG5
RefseqXP_006385675.20.0homeobox-leucine zipper protein HDG5
RefseqXP_024452822.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452823.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452824.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452825.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLB9GZI90.0B9GZI9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]