PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0059s0630.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27676.2 Da PI: 8.1184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g SapurV1A.0059s0630.1.p 121 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAASAYDRAAYRMRG 171 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 120 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-14 | 121 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.45E-30 | 121 | 180 | No hit | No description |
PROSITE profile | PS51032 | 24.408 | 121 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-38 | 121 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-23 | 121 | 181 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.8E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MDGVTSLCEF STLSHHPHRR HRNPSFNSLI SCLTETWGDL PLKMDDSEDM VVYNFLRDAV 60 RFGWSPLDLT SPSTTTATAT NVVKAEPKYE LEQEAEPVEV VQEAGLNGAA FSKRVVAKGR 120 HYRGVRQRPW GKFAAEIRDP AKNGARVWLG TYETAEEAAS AYDRAAYRMR GSKALLNFPH 180 KIGSNEPEPV RITTKRREPE TCLLAVDSGP AKTRRTVVAH GDEMGRGRGS DVFQIGHHMM 240 PAGEQLLVS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-37 | 117 | 186 | 1 | 70 | ATERF1 |
3gcc_A | 2e-37 | 117 | 186 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0059s0630.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022365.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 2e-90 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2K2B7F0 | 1e-126 | A0A2K2B7F0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s15030.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-48 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0059s0630.1.p |