PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0054s0360.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 687aa MW: 79500.2 Da PI: 6.4357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0054s0360.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.5e-24	65	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ SapurV1A.0054s0360.2.p 65 EYYSNFARKNGFSIRKARSTESQHLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIvdgLAQWYVSQFSNV 150 69******************9998.**************************************998756679***** PP FAR1 85 HnHela 90 HnHel SapurV1A.0054s0360.2.p 151 HNHELL 156 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	65	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-23	288	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.594	560	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.8E-7	567	594	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MKPSNNIWIP RQQCPCGDWK CYIKYEGDDQ TSASSQTVKS ETTSSELVFT PYVGQIFKSD 60 DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS 120 IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL 180 LSKAGFPINR IVKVLELEKG VRPGQLPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL 240 ELLEACKSVA ERDPDFAYDY TTDENDKVEN IAWSYGDSVR AYALYGDVVT FDTTYRSITY 300 GLLLGVWFGM DNHGRAILYG CVLLQDESSH SFTWALQTFV RFIRGRHPQT IVTDMELALR 360 DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRYEDFKA QFDLLCHVEN VEDFEHQWNL 420 LVARFELVSD KHMALLFSYR GFWSISYIRG SFLARTMTPE FSQSLHAFLK RILSGQTCLQ 480 VFFEQIGLAA PAGNQTRDGM RYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ 540 EMADGSYLAR HFKKMDGECL VIWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP 600 ERYFPPRWRR DQSLFPMDDQ NSQSNNDDCA QALHALTETL LTESLTSKER FNHVQREITG 660 LLAEVRSMPV AEELSLNMPG NNVSET*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MKPSNNIWIP RQQCPCGDWK CYIKYEGDDQ TSASSQTVKS ETTSSELVFT PYVGQIFKSD  60
DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  120
IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL  180
LSKAGFPINR IVKVLELEKG VRPGQLPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL  240
ELLEACKSVA ERDPDFAYDY TTDENDKVEN IAWSYGDSVR AYALYGDVVT FDTTYRSITY  300
GLLLGVWFGM DNHGRAILYG CVLLQDESSH SFTWALQTFV RFIRGRHPQT IVTDMELALR  360
DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRYEDFKA QFDLLCHVEN VEDFEHQWNL  420
LVARFELVSD KHMALLFSYR GFWSISYIRG SFLARTMTPE FSQSLHAFLK RILSGQTCLQ  480
VFFEQIGLAA PAGNQTRDGM RYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ  540
EMADGSYLAR HFKKMDGECL VIWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP  600
ERYFPPRWRR DQSLFPMDDQ NSQSNNDDCA QALHALTETL LTESLTSKER FNHVQREITG  660
LLAEVRSMPV AEELSLNMPG NNVSET*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0054s0360.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010202.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	B9IAT4	0.0	B9IAT4_POPTR; FAR1 family protein
STRING	cassava4.1_002824m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	SapurV1A.0054s0360.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]