PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0053s0820.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 446aa    MW: 50734.6 Da    PI: 6.0336
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0053s0820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.1e-35161072102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+ +++++sw + g sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF +++F +
  SapurV1A.0053s0820.1.p  16 FLTKTYDMVDDPVTNSVVSWGHGGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFGNEEFIR 93 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+++ll++i+r+k 
  SapurV1A.0053s0820.1.p  94 GQRHLLKNIHRRKP 107
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MMDGSQSNSS NAPPPFLTKT YDMVDDPVTN SVVSWGHGGC SFVVWNPPEF AQDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFGNEE FIRGQRHLLK NIHRRKPVHS HSMQNHGIIS  120
PLSETEKQEY EKEIVRLKHD KNELELELQR NEVEKQGFDF QIVSLGERLQ SMECRQKQLM  180
SSLSQLMRKP DLASLLMHQL EYHNKKRKAL KLDHSQGKYK EEENENSCYP IANLDGFPAP  240
TPYSGPMEKL DSSLKFLENF LYAIGESFSE EVCHVGVRSQ PSMVIVRELS SPSADGEPWS  300
PRSFPSSPHS RDIPSSPELT RCINNVVRQT TPSYPGDDIM PESSQFQANW KHSRAPESEV  360
IKAPALEITS PTVVNGVNDL FWQHFLTEAP GPHDGQEPEG QTQRRITDDI SGDAKPDSHG  420
RSWWNTNYID NLAMHTGQIA AAERS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-241410518120Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0053s0820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139800.0KP013980.1 Populus simonii heat shock transcription factor A4b1 (HsfA4b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321069.10.0heat stress transcription factor A-4b isoform X1
TrEMBLA0A0N7DK430.0A0A0N7DK43_9ROSI; Heat shock transcription factor A4b1
STRINGPOPTR_0014s13780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-75heat shock transcription factor A4A