PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0049s0450.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 616aa    MW: 67621.2 Da    PI: 6.4426
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0049s0450.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182785357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0049s0450.3.p 27 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85
                            5679*****************************************************97 PP
2START1587.2e-501653722204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++  ++e+l+d++ W ++++  e+     +g
  SapurV1A.0049s0450.3.p 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPP-KLAEILKDRQSWFRDCRNLEVFTMFPTG 250
                             7899******************************************************.6666666666*************99999 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h
  SapurV1A.0049s0450.3.p 251 ngGTIELLYSQIYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDH 337
                             99********************************************99999998999****************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +l++++++++lr+l++s+ a ++k +  +l++ +
  SapurV1A.0049s0450.3.p 338 LNLQAWSVPEVLRPLYESSKAVAQKLTIMALRYVR 372
                             *************************9998888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-19985IPR009057Homeodomain-like
PROSITE profilePS5007115.4672286IPR001356Homeobox domain
SMARTSM003893.2E-152490IPR001356Homeobox domain
SuperFamilySSF466891.84E-162588IPR009057Homeodomain-like
CDDcd000864.35E-162787No hitNo description
PfamPF000463.6E-162885IPR001356Homeobox domain
CDDcd146865.96E-679118No hitNo description
PROSITE profilePS5084825.755155383IPR002913START domain
CDDcd088751.13E-71159375No hitNo description
Gene3DG3DSA:3.30.530.204.5E-18164348IPR023393START-like domain
SuperFamilySSF559611.17E-31164353No hitNo description
SMARTSM002346.2E-42164374IPR002913START domain
PfamPF018524.3E-47165372IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAMAVAPQHR ESSSSGSLDK HLTDNGKYVR YTSEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGFMQQQ LQTAPAAADA SCDSAVTTPP HSLRDAINPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQRCSGVA ARACGLVSLE PPKLAEILKD RQSWFRDCRN  240
LEVFTMFPTG NGGTIELLYS QIYAPTTLAP ARDFWTLRYT TSLENGSLVV CERSLSGSGA  300
GPNAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL QAWSVPEVLR PLYESSKAVA  360
QKLTIMALRY VRQIAHETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSLMN  420
SDGAEDVIIA VNTTKNLISA NTPAQSLSFL GGILCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFSVDAYS AASLKAGSYA YPGMRSMRFT GSQIIMPLGH TIEQEELLEV IRLEGHSFAQ  540
EDAFVSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR VIPLESKTVK  600
YERVPHPPFP LVSSD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0049s0450.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196160.0AY919616.1 Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010050.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A3N7FHA20.0A0A3N7FHA2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]