PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0047s0660.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 797aa MW: 86372.6 Da PI: 5.2141 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.5 | 2.3e-30 | 103 | 187 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e gf+r++k+Ckek+en++k+yk++keg+ +r+ + +++++f+qlea SapurV1A.0047s0660.1.p 103 RWPRQETLALLQIRSEMDATFRDATLKGPLWEDVSRKLAEMGFKRNAKKCKEKFENVHKYYKRTKEGRAGRQ--DGKRYRFFSQLEA 187 8*********************************************************************85..5556*******85 PP | |||||||
2 | trihelix | 104.9 | 5.8e-33 | 520 | 605 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+ k+r +e+ +tcpyf++l+a SapurV1A.0047s0660.1.p 520 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYRRSAKRCKEKWENINKYFKKVKESHKNR-PEDAKTCPYFHELDA 605 8********************************************************************98.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.015 | 100 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.17E-28 | 102 | 167 | No hit | No description |
Pfam | PF13837 | 2.0E-20 | 102 | 188 | No hit | No description |
PROSITE profile | PS50090 | 6.504 | 102 | 160 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.039 | 513 | 577 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.015 | 517 | 579 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-22 | 519 | 606 | No hit | No description |
CDD | cd12203 | 1.07E-30 | 520 | 584 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MQQEGGEGGS PPSQYGVSHQ QQGDAPITAP PSAALETHMQ QQQQQQQQVV EEASPISSRP 60 PATTSGVMNL DEFMRLSGSG GAEEDSGAGE DADRTGGVAS GNRWPRQETL ALLQIRSEMD 120 ATFRDATLKG PLWEDVSRKL AEMGFKRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKRYR 180 FFSQLEALHN TTGGGGASAS VINLTGAAPQ QIATPLTSSL DVAPVSVGFP MPISSSVRIP 240 PPSSQALQPA SNIGSMFPPD LGATAAAAAA PPAAGAGPAG ISFSSNGSSS SPSSEDDDDE 300 DEELLGGQPS ATAAGTSRKR KRAALSSARG ETHRMMEFFE GLMKQVMQKQ EAMQQRFLEA 360 IEKREQDRMI RDEAWKRQEM ARLSREHEIM AQERAISASR DAAIVAFLQK ITGQTIHLPT 420 SVSMAPPFSL PPPPPPQLPE PVQITPLVTV STQPPPTQPQ TIPQPQVTLP QQQQQQYQQG 480 HRQHQLSISS DIVMAVPEQQ RAPQEIGSGG GSGSEPASSR WPKPEVLALI KLRSGLETRY 540 QEAGPKGPLW EEISAGMQRM GYRRSAKRCK EKWENINKYF KKVKESHKNR PEDAKTCPYF 600 HELDALYRKK ILGGSSGGGG GGGGSTSTSG FDSQSRPQEQ QQQQESLKLD PMPHPMQQPP 660 QQTQATESQN KNGAGGAVQA SNIGLSGSLP GEGNGGASKP EDIVKELKKQ QGTHQQQHLM 720 VDYYDKMEEG DRENVNEDEY DDEDEGEEDE EEEEEAEGLQ EERKMAYKIE FQRQNTSSAA 780 NGGGTGAPPS FLAMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | KRNAKKCKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0047s0660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004380.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | G8G9Q9 | 0.0 | G8G9Q9_POPCN; GTL1 | ||||
STRING | POPTR_0001s45870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 2e-50 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0047s0660.1.p |