PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0045s0430.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 239aa MW: 26604.5 Da PI: 10.2089 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.4 | 6.2e-24 | 171 | 213 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 d+e grCrRtDGKkWRCs+++l+++k+C+rH+hrgr+rsrk SapurV1A.0045s0430.1.p 171 DPEIGRCRRTDGKKWRCSKEALPDQKYCDRHIHRGRQRSRKLE 213 79**************************************975 PP | |||||||
2 | QLQ | 34.3 | 7.4e-13 | 101 | 136 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 a+T Qlq+L Q l+yKy+ a+ PvP +L+++i++ SapurV1A.0045s0430.1.p 101 ALTVLQLQELQLQSLIYKYIQAGFPVPFQLVLPIWR 136 56777*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 17.312 | 101 | 136 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.4E-9 | 103 | 135 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.381 | 171 | 215 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.8E-20 | 172 | 212 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKWSLKPHLP NLPVFQTPVC TYSCIFQAFQ SNKSNQPYRS QFFSSFYLLS FTGTRLASGG 60 NVERNMRHGE SGSPPIGLGL ELGRGSGSSQ RPIISCKKHY ALTVLQLQEL QLQSLIYKYI 120 QAGFPVPFQL VLPIWRSVAT SLGGLSSRLL QLYPSLMGCS PLYLEYKNGV DPEIGRCRRT 180 DGKKWRCSKE ALPDQKYCDR HIHRGRQRSR KLEESASPGN SSTNLSISLP GISSASAW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0045s0430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298083.2 | 9e-94 | growth-regulating factor 10 | ||||
TrEMBL | B9GKS4 | 2e-92 | B9GKS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08310.1 | 3e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-25 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0045s0430.1.p |