PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0044s0480.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 302aa MW: 33613.3 Da PI: 7.9945 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.8 | 1.8e-36 | 46 | 102 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprC+stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr+++k++ SapurV1A.0044s0480.1.p 46 LLKCPRCESTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKKQK 102 689***********************************************8888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.3E-32 | 46 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.596 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-21 | 48 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGLSSKQVTG DGLDWSQTLL QAHTLELPRP PVIRRQQEQN QLQFELLKCP RCESTNTKFC 60 YYNNYNKSQP RHFCKTCKRH WTKGGTLRNV PVGGGRKNKK QKTSKTSSNT TNSSSTVSTA 120 APCNNNNMIN RVNPQLAIPA QQQKLNHPDL VHGDQRNFSE TLYQAMINPP SSVLQQNSIS 180 CDNLDTKSFN INNNGVLSGS SVSIPQNQGL LFPYSSYFDT LPSSICTSFQ PSNVYNHTGE 240 SMEDSTITTI MPSTSSSITQ SLQVPNTSSG MDMTNYWNWD DIENFVSADL NVPWDDSEIK 300 P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0044s0480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047842.1 | 1e-171 | PREDICTED: dof zinc finger protein DOF1.1-like | ||||
TrEMBL | B9HYL3 | 1e-167 | B9HYL3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s04730.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-26 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0044s0480.1.p |