PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0043s0920.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 671aa    MW: 77856.5 Da    PI: 6.9744
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0043s0920.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.6e-2359143190
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +fYn Y+ke GF +r+s+s  +++ +e +++++ Cs  g++++++ +     ++r+etrtgC a++++++ ++++w++ ++eleHnH
  SapurV1A.0043s0920.1.p  59 DFYNVYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVDVELEHNH 140
                             6*********************999*****************99888.....9********************************** PP

                    FAR1  88 ela 90 
                             +++
  SapurV1A.0043s0920.1.p 141 PVN 143
                             986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-2159144IPR004330FAR1 DNA binding domain
PfamPF105513.1E-25266351IPR018289MULE transposase domain
PROSITE profilePS509669.297552588IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-4556584IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEEVCLNSEP VFDDGDDYEV EGDSSGVGCD DETGENCSKK KRSEPTVGLE FDSFDEAYDF  60
YNVYGKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IRLVDSKRWR IVDVELEHNH PVNPQIKRFY KSHKRMVLAA KKAQPPPEPV TEVHTIRLHR  180
RALMNTGCNV YLNVDEMGHV DHVDHFKHLE LKEGDALAVY NYLCRMKLTN PNFFYLMDLD  240
DEGRLRNVFW ADARSRVAYG FFCDTVTIDT TCLANRYEMP LISFVGVNHH GQSVFLGCGF  300
LGHESKEYFV WIFRAWLKCM HGHFPEVIIT DQNKSLQSAV SEVFPNARHC YNVCCITQRV  360
PERLGGLQGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKC HGLGDNKWLQ TLYEERQAWV  420
PVYLKDIFFV GMIPIQEHES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEAMADLES  480
TNSSYEFKTR CNFEVQLSKV YTKEIFRKFQ SEVEGMYSCF NTKQVRVNGQ IATYIVKERV  540
EVAGSEKEVR HFEVLYDTSQ ADIRCICSLF NYKGYLCRHA MNVLNYNGVE EVPSRYILPR  600
WGKDYKRRGL LDLNPGYIDV NNPIYWHNLL YRFAIPVVDV GAQSSDHYKI ALHELEELLK  660
IFNLAEDNLV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0043s0920.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134250.0AC213425.1 Populus trichocarpa clone POP064-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309639.30.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A2K2A8A90.0A0A2K2A8A9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6