PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0041s0200.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 704aa MW: 79390.6 Da PI: 5.2379

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0041s0200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.2	2.2e-112	331	699	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lL++cA+av+ gd++ a++lL+++++++s gd +qRla+yf++AL +r+a++++ ++ + + +ts +e+l+a+++++ ++P+ SapurV1A.0041s0200.1.p 331 LLTQCAQAVAIGDQRTASELLQQIRQHSSAFGDGNQRLAHYFANALDTRVAGTMTPTFTPIVSHRTS---AAESLKAYQVYVGACPF 414 89************************************************777777666666665...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 ++s++ aN++Il+ + ++ r+HiiDf+i +G+QWp+L++ L++R++gpp+lRiTg++ p++g +e++eetg+rL+k++e+++vp SapurV1A.0041s0200.1.p 415 KRMSNFFANRTILKLARKAARLHIIDFGILYGFQWPCLIRRLSERRGGPPRLRITGIELPQPGfrPTERVEETGHRLEKYCERFKVP 501 **********************************************************9******************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 fe+++ +a+++e++++e+L++++gE+++Vn+ ++l++l+d++v+ +s+rd+vLkl+++++P+++++ + n++ F++rf eal+ SapurV1A.0041s0200.1.p 502 FEYDA-IAQKWETIRYEDLKIDEGEMIVVNSLYRLKNLPDDTVAENSARDAVLKLINKIRPDIFIHGVVNGAFNAPYFVTRFREALY 587 *.7**************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 +ys+lfd++ea++ re+e+r+ E+e grei nv+aceg+ r+er et+++W++r +aGF++++l+++ k+++++++ +++ + SapurV1A.0041s0200.1.p 588 HYSSLFDMFEATVLREDENRMLFEKEQYGREIINVIACEGSTRVERPETYKQWQSRNLRAGFRQLTLDQELFKDVSSVVKSEYQRDF 674 ********************************************************************************999 PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 v+ + +++++gWk+r ++S+W+ SapurV1A.0041s0200.1.p 675 VVDADGQWMLQGWKGRITHALSVWK 699 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.444	302	679	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.7E-110	331	699	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MDTLFQEFPN SMNRFIFDHA SVSLSPNRDL VIRYKLNDAS SNPNPSLDYF NTESPGESTS 60 SSSSSSNSSS EVDAPSNNVT LKFISDVLLE EDLEGKTCML QDCLALQAAE KSFYDVLGQE 120 YPHSMNHQSR SCFNQNVEST DDCVTLIDST GSTSGYHTSD WIFDQADLEL SQVLLPSPVF 180 SLENTLLGPD FQSPAQPPEM ASEGRGEAGS CLSSSDYLMP SPERSSSNPP DKEERGYSPD 240 SSSGRKNHQR EDSGGVEEER GKKHSALSPA ESEQSELFDE VLLYSCAQNV SSSCTDKSQN 300 GAWRNEPRKG SNCRAARAMR KEKKEVDLSP LLTQCAQAVA IGDQRTASEL LQQIRQHSSA 360 FGDGNQRLAH YFANALDTRV AGTMTPTFTP IVSHRTSAAE SLKAYQVYVG ACPFKRMSNF 420 FANRTILKLA RKAARLHIID FGILYGFQWP CLIRRLSERR GGPPRLRITG IELPQPGFRP 480 TERVEETGHR LEKYCERFKV PFEYDAIAQK WETIRYEDLK IDEGEMIVVN SLYRLKNLPD 540 DTVAENSARD AVLKLINKIR PDIFIHGVVN GAFNAPYFVT RFREALYHYS SLFDMFEATV 600 LREDENRMLF EKEQYGREII NVIACEGSTR VERPETYKQW QSRNLRAGFR QLTLDQELFK 660 DVSSVVKSEY QRDFVVDADG QWMLQGWKGR ITHALSVWKP VQE*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MDTLFQEFPN SMNRFIFDHA SVSLSPNRDL VIRYKLNDAS SNPNPSLDYF NTESPGESTS  60
SSSSSSNSSS EVDAPSNNVT LKFISDVLLE EDLEGKTCML QDCLALQAAE KSFYDVLGQE  120
YPHSMNHQSR SCFNQNVEST DDCVTLIDST GSTSGYHTSD WIFDQADLEL SQVLLPSPVF  180
SLENTLLGPD FQSPAQPPEM ASEGRGEAGS CLSSSDYLMP SPERSSSNPP DKEERGYSPD  240
SSSGRKNHQR EDSGGVEEER GKKHSALSPA ESEQSELFDE VLLYSCAQNV SSSCTDKSQN  300
GAWRNEPRKG SNCRAARAMR KEKKEVDLSP LLTQCAQAVA IGDQRTASEL LQQIRQHSSA  360
FGDGNQRLAH YFANALDTRV AGTMTPTFTP IVSHRTSAAE SLKAYQVYVG ACPFKRMSNF  420
FANRTILKLA RKAARLHIID FGILYGFQWP CLIRRLSERR GGPPRLRITG IELPQPGFRP  480
TERVEETGHR LEKYCERFKV PFEYDAIAQK WETIRYEDLK IDEGEMIVVN SLYRLKNLPD  540
DTVAENSARD AVLKLINKIR PDIFIHGVVN GAFNAPYFVT RFREALYHYS SLFDMFEATV  600
LREDENRMLF EKEQYGREII NVIACEGSTR VERPETYKQW QSRNLRAGFR QLTLDQELFK  660
DVSSVVKSEY QRDFVVDADG QWMLQGWKGR ITHALSVWKP VQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-45	334	700	25	380	Protein SCARECROW
5b3h_A	3e-45	334	700	24	379	Protein SCARECROW
5b3h_D	3e-45	334	700	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0041s0200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299863.1	0.0	scarecrow-like protein 14
TrEMBL	A0A385JHP5	0.0	A0A385JHP5_POPTO; SCARECROW-like 14
TrEMBL	B9GJL6	0.0	B9GJL6_POPTR; Uncharacterized protein
STRING	POPTR_0001s24890.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0041s0200.1.p