PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 708aa    MW: 79411.7 Da    PI: 5.7208
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.26e-1103387033374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lL++cA+av+ gd++ a++lL+++++++sp+gd++qRla+yf+ AL +rla++ +  +  + + +ts    ++ l+a+++++ ++P
  SapurV1A.0040s0520.1.p 338 SLLIQCAQAVAIGDQRTASELLQQIRQHSSPHGDANQRLAHYFADALDTRLAGTATPAFTLFVSPRTS---AADILKAYQVYVRACP 421
                             79***************************************************766666666555554...89************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                             + ++s++ aN++Il+  ++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rL++f    +v
  SapurV1A.0040s0520.1.p 422 FKRMSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLERF----KV 504
                             ***************************************************************9**************986....9* PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pfe+ + +a+++e++++e+L+++++E+++Vn+ ++l +l+d++   +s+rd+vLkl+++++P+++++   + + n++ F++rf eal
  SapurV1A.0040s0520.1.p 505 PFEYIA-IAQKWETIRYEDLKIDKDEKVVVNCLYRLRNLPDDTIVENSARDAVLKLINEIKPDMFIHGVVNGNFNAPFFVTRFREAL 590
                             ******.7******************************************************************************* PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                             +++s+lfd++ea+++r++e+r+  E+e  gr+i+nv+aceg++r+er et+++W++r  +aGF+++pl+++  k+++++++  +++ 
  SapurV1A.0040s0520.1.p 591 YHFSSLFDMFEATVSRKDEHRMLFEKEQYGRDITNVIACEGKARVERPETYKQWQSRNLRAGFTQLPLDKELFKDVRSVVKSEYDKD 677
                             ************************************************************************************999 PP

                    GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                             + v+ + +++++gWk+r ++++S W+
  SapurV1A.0040s0520.1.p 678 FVVDADGQWVLQGWKGRIIYALSIWK 703
                             *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.309310683IPR005202Transcription factor GRAS
PfamPF035142.1E-107338703IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDTLLQECPN SLNRFMFDHA SVSFSPNRNR FDGYKLNDTM SDPNPSFNSS NPEPPNDSAS  60
PTSSSSSSSE SYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK SFYDVLGQEY  120
PHSSNQIRSC FDQNFESPGN GFTWRSGVDS SKSYPPGNNL VEKSDWVFDQ SDLDFYQAQA  180
SPVLPLERTL LGPDLHSPVH PFEVLSKGGG DADSFLSGND YLMASSASNS SNPPDKDDGE  240
HSPNSSRGRK NHQREDSDGL EEERSKKQSA LSPADSELSE LLDEVLLCSV GQNESTSCSL  300
LGNSQNGAAG NEQRKGSNGR TARGKKRGKK GEVVDSSSLL IQCAQAVAIG DQRTASELLQ  360
QIRQHSSPHG DANQRLAHYF ADALDTRLAG TATPAFTLFV SPRTSAADIL KAYQVYVRAC  420
PFKRMSNFFA NRTILKLEKK ATRLHIIDFG ILYGFQWPCL IQRLSERPGG PPKLRITGIE  480
LPQPGFRPAE RVEETGRRLE RFKVPFEYIA IAQKWETIRY EDLKIDKDEK VVVNCLYRLR  540
NLPDDTIVEN SARDAVLKLI NEIKPDMFIH GVVNGNFNAP FFVTRFREAL YHFSSLFDMF  600
EATVSRKDEH RMLFEKEQYG RDITNVIACE GKARVERPET YKQWQSRNLR AGFTQLPLDK  660
ELFKDVRSVV KSEYDKDFVV DADGQWVLQG WKGRIIYALS IWKPVQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-463407038375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2308540.0CU230854.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042725.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9HPF30.0B9HPF3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-176GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]