PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0040s0490.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 658aa MW: 74654.3 Da PI: 5.4547

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0040s0490.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347	3.1e-106	285	655	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++lL++cAeav+ +d+ a +lL++++++++p gd qRla++f +AL+ar+a+++sely+ l++++ + ++ l+a + f +s SapurV1A.0040s0490.1.p 285 RTLLIHCAEAVAGNDHGSAIELLTQIRQHSTPFGDGSQRLAHCFSNALHARMAGTGSELYANLAANRVT---AERILKASRRFISAS 368 679*******************************************************999888887...8999999**** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 P++ +s++ q+Il+ e++ r+Hii f+i +G+ Wp+L+q L++Rp+gpp lR+Tg++ p++g s+e++ee+g L++++e+++ SapurV1A.0040s0490.1.p 369 PFIVMSNFFSTQTILDLSENAARLHIIHFGILYGFPWPSLIQHLSARPGGPPVLRVTGIEFPQTGcrSAETIEEIGPYLESYCEKFN 455 *************************************************************99****************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 vpfe+n+ +++++e+++le+L+++++E+++V++ ++ rllde+v l+ +rd+v++l+k+++P v+++ + +ns+ F+ rf ea SapurV1A.0040s0490.1.p 456 VPFEYNA-ISQKWENVQLEDLKINRDEVTVVSSLYRFRRLLDETVVLNGHRDAVISLIKRINPAVFIHGIVNGAYNSPFFVSRFREA 541 ***.7************************************************************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 l y+s+lfd+lea+ +re+ er + E+e++g+ei nv+aceg +r+er e++++W++r +aG++++pl+e ++++++ ++ + + SapurV1A.0040s0490.1.p 542 LFYFSSLFDMLEANTAREDPERLVFEQEVFGKEILNVIACEGCDRIERPEKYKQWQARNVRAGLRQLPLKEGIMEKVREQVKSSYHK 628 *********************************************************************************88 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 + ++++ +++++gW++r L+++S+W+ SapurV1A.0040s0490.1.p 629 DFLMDQDGQWMLQGWRGRILFAISCWK 655 8***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.274	258	635	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-103	285	655	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MNPVFKDPKA DAVLKCISQI LMEEESDEQT FIARDFSIRA AEKPFSDILD PKSSSSYGEV 60 SDPDQIIKTV SAHCCNIYGC NSSVPADNMA VSRFILNREA PSVNYSVPLS LQVESLPSFF 120 PESVFQTFPE QVDSSVNVAL GESQLDVFFK GETEETWEFH QQENEMILDF ENNKVTPVTG 180 TKEKSYRDYC ACELKERKNH YRVEKESGTK RNKHSSDEAA DQHGMFDEVF PSTGGDDEPV 240 WLNLNETFQN GPGKMPYIKE QSRGSNYGMI SMKNQVRCRE MVDTRTLLIH CAEAVAGNDH 300 GSAIELLTQI RQHSTPFGDG SQRLAHCFSN ALHARMAGTG SELYANLAAN RVTAERILKA 360 SRRFISASPF IVMSNFFSTQ TILDLSENAA RLHIIHFGIL YGFPWPSLIQ HLSARPGGPP 420 VLRVTGIEFP QTGCRSAETI EEIGPYLESY CEKFNVPFEY NAISQKWENV QLEDLKINRD 480 EVTVVSSLYR FRRLLDETVV LNGHRDAVIS LIKRINPAVF IHGIVNGAYN SPFFVSRFRE 540 ALFYFSSLFD MLEANTARED PERLVFEQEV FGKEILNVIA CEGCDRIERP EKYKQWQARN 600 VRAGLRQLPL KEGIMEKVRE QVKSSYHKDF LMDQDGQWML QGWRGRILFA ISCWKSA*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MNPVFKDPKA DAVLKCISQI LMEEESDEQT FIARDFSIRA AEKPFSDILD PKSSSSYGEV  60
SDPDQIIKTV SAHCCNIYGC NSSVPADNMA VSRFILNREA PSVNYSVPLS LQVESLPSFF  120
PESVFQTFPE QVDSSVNVAL GESQLDVFFK GETEETWEFH QQENEMILDF ENNKVTPVTG  180
TKEKSYRDYC ACELKERKNH YRVEKESGTK RNKHSSDEAA DQHGMFDEVF PSTGGDDEPV  240
WLNLNETFQN GPGKMPYIKE QSRGSNYGMI SMKNQVRCRE MVDTRTLLIH CAEAVAGNDH  300
GSAIELLTQI RQHSTPFGDG SQRLAHCFSN ALHARMAGTG SELYANLAAN RVTAERILKA  360
SRRFISASPF IVMSNFFSTQ TILDLSENAA RLHIIHFGIL YGFPWPSLIQ HLSARPGGPP  420
VLRVTGIEFP QTGCRSAETI EEIGPYLESY CEKFNVPFEY NAISQKWENV QLEDLKINRD  480
EVTVVSSLYR FRRLLDETVV LNGHRDAVIS LIKRINPAVF IHGIVNGAYN SPFFVSRFRE  540
ALFYFSSLFD MLEANTARED PERLVFEQEV FGKEILNVIA CEGCDRIERP EKYKQWQARN  600
VRAGLRQLPL KEGIMEKVRE QVKSSYHKDF LMDQDGQWML QGWRGRILFA ISCWKSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-45	272	654	7	378	Protein SCARECROW
5b3h_A	1e-45	272	654	6	377	Protein SCARECROW
5b3h_D	1e-45	272	654	6	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0040s0490.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314170.1	0.0	scarecrow-like protein 14
TrEMBL	B9HPF6	0.0	B9HPF6_POPTR; Uncharacterized protein
STRING	POPTR_0009s03810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-163	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0040s0490.1.p