PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0040s0420.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 494aa MW: 54717.8 Da PI: 9.7047 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 393 | 442 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + k+Rt ++k++w ++ SapurV1A.0040s0420.2.p 393 RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 442 678999********************8877779**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 6.99E-8 | 201 | 291 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 1.2E-4 | 202 | 275 | No hit | No description |
PROSITE profile | PS50053 | 8.568 | 204 | 274 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.355 | 388 | 447 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-6 | 392 | 445 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 393 | 443 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.98E-16 | 394 | 475 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.35E-17 | 394 | 444 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MVQSSTVVNM CNLEDPVVLD AKPPALVSSD SRAKVPACGN HISNSSYPTN QDDLHVVSRD 60 DDENSSGCTH PITTKKFFRP APRIGDRRIR KFLASKCWKV APRLKDATVS NSDGNFKPVF 120 RKRQNCYRHQ RSERIYPFKK RKHFAYSSPS NSDGGMSCEF VSDLSLKGSN GDASVSRSRM 180 HGATGASSSF AGQRTSFLPR DSHVKLRIKS FSVPEFLIEI PESSTVGSLK RTVMEAVTAI 240 LGSGLHVGVL LQGKKVREDN KTLRQTGISH NNQLDALGFC LEPNPSQTPP SLSPGDSPFL 300 LQCDTPQPIC RYPPTTGEVH QDICADPEPH VNNLGNYIES DHDSAPSPTD TSMDKSTNSK 360 ALVAVPAMNV EALAVVPAHQ KSKRSEIAQR RIRRPFSVTE VEALVHAVEK LGTGRWRDVK 420 LQAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSQQQAKQ 480 QFKHQQAETC LLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-58 | 377 | 480 | 1 | 104 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 141 | RKRQNCYRHQRSERIYPFKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0040s0420.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208932 | 1e-89 | AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464366.1 | 0.0 | telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_024464367.1 | 0.0 | telomere repeat-binding protein 5 isoform X1 | ||||
Swissprot | Q6R0E3 | 1e-144 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A2K1Z217 | 0.0 | A0A2K1Z217_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-140 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0040s0420.2.p |