PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0420.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 666aa    MW: 73541.9 Da    PI: 8.979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07565614147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  SapurV1A.0040s0420.1.p 565 RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 614
                             678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.19E-7375463IPR029071Ubiquitin-related domain
PROSITE profilePS500538.568376446IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.903.1E-4376447No hitNo description
PROSITE profilePS5129415.355560619IPR017930Myb domain
SMARTSM007172.1E-6564617IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10565615IPR009057Homeodomain-like
SuperFamilySSF466891.26E-15566647IPR009057Homeodomain-like
CDDcd116602.71E-17566616No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPVP RATRSARKHE ENQICAFDLL AIVAGKLLLD KKIAPSSSNT  60
SADKDQCAVI NSAVKNKWQD VEKSLKVEAC DQGSSDNNIY VSDLSHVHRQ GCSSKESLVT  120
QNDLNLGLAS ALTKPDCAER SNAERLVSGQ TKNEIGTFAS KAEGDSSEYR EFGDCKSEAA  180
TKRAVKDEPH KSGMVQSSTV VNMCNLEDPV VLDAKPPALV SSDSRAKVPA CGNHISNSSY  240
PTNQDDLHVV SRDDDENSSG CTHPITTKKF FRPAPRIGDR RIRKFLASKC WKVAPRLKDA  300
TVSNSDGNFK PVFRKRQNCY RHQRSERIYP FKKRKHFAYS SPSNSDGGMS CEFVSDLSLK  360
GSNGDASVSR SRMHGVKLRI KSFSVPEFLI EIPESSTVGS LKRTVMEAVT AILGSGLHVG  420
VLLQGKKVRE DNKTLRQTGI SHNNQLDALG FCLEPNPSQT PPSLSPGDSP FLLQCDTPQP  480
ICRYPPTTGE VHQDICADPE PHVNNLGNYI ESDHDSAPSP TDTSMDKSTN SKALVAVPAM  540
NVEALAVVPA HQKSKRSEIA QRRIRRPFSV TEVEALVHAV EKLGTGRWRD VKLQAFDNAK  600
HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSQQQA KQQFKHQQAE  660
TCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-575496521104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313334RKRQNCYRHQRSERIYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464369.10.0telomere repeat-binding protein 5 isoform X3
TrEMBLA0A2K1Z2090.0A0A2K1Z209_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-160TRF-like 2