PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0039s0340.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37739.5 Da    PI: 4.5382
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0039s0340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-1959112356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  SapurV1A.0039s0340.2.p  59 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 112
                             566899***********************************************9 PP
2HD-ZIP_I/II130.75.7e-4258150193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ ++L++++e+L
  SapurV1A.0039s0340.2.p  58 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSVLKANYDSLEHNFDALQHDNETL 144
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                              +e++e
  SapurV1A.0039s0340.2.p 145 LKEIRE 150
                             999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1946116IPR009057Homeodomain-like
PROSITE profilePS5007117.44354114IPR001356Homeobox domain
SMARTSM003891.0E-1757118IPR001356Homeobox domain
CDDcd000867.60E-1759115No hitNo description
PfamPF000464.8E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-2061121IPR009057Homeodomain-like
PRINTSPR000319.8E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000319.8E-694110IPR000047Helix-turn-helix motif
PfamPF021831.3E-17114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKRSLGSSDS LGALMSICPT TEHSPRNHAH VYSREFQSML DGLDEEGCVE EAGGHVTEKK  60
RRLSVDQVKA LEKNFEVENK LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY  120
SVLKANYDSL EHNFDALQHD NETLLKEIRE LKAKLNEDNV NSNVSVKEEI ILAESEDKVA  180
EEETPALLDS VAASETKEMN YETFNNHSSI NIGLGASLFP DFKDGSSDSD SSAILNNEDN  240
SPNPAISSSG ILQSQLMVSP PPSSSLKFNC SASSSSPSSM TCFQFSKSYQ AQFVKLEEHN  300
FFSSEEACNF FSDEQPPTLP WYSSDQWNQE TGTNNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0039s0340.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479450.0EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380403.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLA9PHT90.0A9PHT9_POPTR; HD-ZIP family protein
STRINGPOPTR_0007s05010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-81homeobox protein 6