PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0038s0250.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 379aa    MW: 43069.5 Da    PI: 4.9843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0038s0250.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-0689112226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             k  lC ff + G+C  G +CkF+H+
  SapurV1A.0038s0250.3.p  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                             6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-687112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-489113IPR000571Zinc finger, CCCH-type
SMARTSM003561.5157194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.831157195IPR000571Zinc finger, CCCH-type
PfamPF165433.3E-17214294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPPKQSKADL AKKQKIVDDK TFGLKNKSKS KSVQKYVQNI QQAAQPKQDP SKIAAKKRKE  60
EEKAREKELS DLFKVAVSQP KVPAGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KINIFSDQRD DDTMDDWDQE TLEKVVESKK NEYNQNKPTD IVCRYFLEAV EKKQYGWFWS  180
CPNGDKECHY RHALPPGYVL KSQMKALLEE EANKIPIEEE IENQRAKLTA STPMTPDLFM  240
LWKKKKVEER EAGLATKRAE RAKNDRMSGR ELFLSDSSIF VDDAEAYENY QREEERMVSE  300
EKSKVNSAAV PSSSTGAVAD TEEDLPDDDE DDDELDMDEL NELEASLFTC LMVYGFSCLI  360
SVQGQFSGST KQLDRGSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0038s0250.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312050.20.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-172C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2K1ZBR50.0A0A2K1ZBR5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-131C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]