PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0038s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 502aa    MW: 55532.5 Da    PI: 7.9837
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0038s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-17168217155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0038s0220.1.p 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 217
                             78*******************......55************************997 PP
2AP242.12.2e-13260310155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a++k +g
  SapurV1A.0038s0220.1.p 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAALKCNG 310
                             89********.7******5553..2.26**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15168226IPR016177DNA-binding domain
PfamPF008477.6E-9168217IPR001471AP2/ERF domain
SMARTSM003808.9E-33169231IPR001471AP2/ERF domain
CDDcd000186.78E-24169227No hitNo description
PROSITE profilePS5103217.583169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-17169225IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-17260319IPR016177DNA-binding domain
PfamPF008476.9E-9260310IPR001471AP2/ERF domain
CDDcd000188.01E-26260320No hitNo description
SMARTSM003802.5E-31261324IPR001471AP2/ERF domain
PROSITE profilePS5103215.712261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-16261318IPR001471AP2/ERF domain
PRINTSPR003675.5E-6262273IPR001471AP2/ERF domain
PRINTSPR003675.5E-6300320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLDLNLGITH SDSSCDDNNK NNMMFFVDVE NHYHQEEAAA SRTHQMEDSA TSNSSVINNT  60
EDENSSNNSN SAFIFDILKK DENFTSTTTT DASKQTNSNC DFTTQQLSPQ RSGLKLNLQP  120
GLGATTDTRP QWLKLSQMGP GGESELKIVQ QKQQQARKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA DINFTLSDYE EDMKQMKNLN  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA  300
YDKAALKCNG REAVTNFEPS VYKGEIVFDT NHGGSGHNLE LSLGISQPSN DSKGNDNLGD  360
GHCCYGGCEM PIKERQVAGG TAAAHMGLDT LRGLPVVSKN LLTWSGMHPG LASSYEATTE  420
KRFEAVSSPR FSSWPWQING SNNVVATMPQ LCVAASSGFS SSTKTVPPAS LPFNQQNHFA  480
NNLRLTSFTT SATNPFYSYI S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0038s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463449.10.0floral homeotic protein APETALA 2 isoform X2
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2K1ZBQ10.0A0A2K1ZBQ1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-98related to AP2.7