PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0034s0500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 15582.5 Da PI: 10.2595 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 131.4 | 1.2e-40 | 18 | 109 | 79 | 170 |
YABBY 79 eenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++ + + + s+s+ +++ ++ + ++ v++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ SapurV1A.0034s0500.2.p 18 NHISHDYRIDMGSSSKFNNKISMRTPATNIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPH 104 333333444555555556666677788888888888*************************************************** PP YABBY 166 ihfgl 170 i fgl SapurV1A.0034s0500.2.p 105 IQFGL 109 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.2E-40 | 15 | 109 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-8 | 53 | 103 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.3E-5 | 57 | 103 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MAAAFQSLSW QDHVQASNHI SHDYRIDMGS SSKFNNKISM RTPATNIVTQ ERVVNRPPEK 60 RQRVPSAYNQ FIKEEIQRIK ANNPEISHRE AFSTAAKNWA HFPHIQFGLM LETNNQTKLD 120 DGSDKHLLSR AALLNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0034s0500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324648.2 | 2e-95 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 4e-50 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9IMX9 | 4e-94 | B9IMX9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12990.1 | 6e-95 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-52 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0034s0500.2.p |
Publications ? help Back to Top | |||
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