PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0034s0500.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 189aa MW: 21281.1 Da PI: 8.0865

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0034s0500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203	1.1e-62	10	161	7	170
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ ++h++ +++ ++ + + + +++ + SapurV1A.0034s0500.1.p 10 HEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDHVQ--ASNHISHDYRID-----MGSSSKF--N 87 69***************************************************943..334444444433.....2222222..2 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ + ++ v++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl SapurV1A.0034s0500.1.p 88 NKI---SMRTPATNIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIQFGL 161 222...22334444455555689**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.8E-70	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	9.29E-8	105	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSSCVDAVPH EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDHVQASN HISHDYRIDM GSSSKFNNKI SMRTPATNIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPEISH REAFSTAAKN WAHFPHIQFG LMLETNNQTK LDDGSDKHLL 180 SRAALLNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0034s0500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	2e-46	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	2e-46	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324648.2	1e-137	axial regulator YABBY 5
Swissprot	Q8GW46	4e-84	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9IMX9	1e-136	B9IMX9_POPTR; Uncharacterized protein
STRING	POPTR_0018s12990.1	1e-137	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-86	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0034s0500.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]