PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0300.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 326aa    MW: 35716.4 Da    PI: 8.4933
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-40175252178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh+lsefD++krsCr+rLa+hn+rrrk+++
  SapurV1A.0033s0300.2.p 175 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVFAAGLTQRFCQQCSRFHMLSEFDNGKRSCRKRLADHNRRRRKSHQ 252
                             6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-34169237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.812173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-37174251IPR004333Transcription factor, SBP-box
PfamPF031102.3E-30176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLGYEWGNPS TIMLSGGDEQ AASSQEVEDL NRQANIFDHY TTPSFSDNNL FPQQTSSTLM  60
FQNHPTATSS AHHNFNPLFD PRAYGGSGAP SYSANHPSLL SLDSIPAITS VATATPHFLV  120
PKSEEISRSS DLITPRIGLD LGGRTYFSSV EDDFVNRLYR RSRPLDPGSS SNALRCQAEG  180
CNADLTHAKH YHRRHKVCEF HSKAATVFAA GLTQRFCQQC SRFHMLSEFD NGKRSCRKRL  240
ADHNRRRRKS HQVSQENQKS QLQNAANSSS EILTMSPPDS GAHSISAATA TVSPPRMSLD  300
CFKLRAYQAT ASSSTSSSSL FFSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-32169249384squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017436.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLB9GPA70.0B9GPA7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-78squamosa promoter binding protein-like 8