PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0430.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 650aa    MW: 71596.8 Da    PI: 8.1394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0430.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.5e-08175194525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             +C+ff++ G+C +G++C+F H
  SapurV1A.0032s0430.5.p 175 ICDFFSK-GWCIRGSSCRFLH 194
                             8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161315.9E-7140204IPR032297Torus domain
SuperFamilySSF902293.79E-6170195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0062170196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4175195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MSELKEDSVN NFKWCGPLDR PLRLHKEKSC VNYADSRSPK LSKHLVFAQK NGTLECAVNK  60
TDADAHTIKN RKGCSEAFGN SKTHLGNSSE ALAVETAHPF VITGMEVDAV LSMRNCLGQG  120
VNIVMGSKEE HKPVDVKSED TKEQKASRLA ASGTRARSIS PSTELRDGNK RAAVICDFFS  180
KGWCIRGSSC RFLHTTNKAD NISQQSGVDE VATREDPFDE GKEATFSSHF SPERLPPLEH  240
KENQRLHQLD DKHKLSPRQR EGIPRNAKHF SSSKDDPGFS SSFKDVGIES FRQHWPGTDY  300
GSYSSLINRG SLFSFSSTFD LSLLGSQKLP DGDCASRSSS LLRSASAFSG SEPESLSLAG  360
VPRDRLRLAE HKTKISSNDW EPSVPFRPSF FITPEMISSA GSKYDPLRDS FDLPNIGDKS  420
FEFSFFSLGA SISNTSQQPI YDSLSNQNFD TEFNGEKSAI SSHDKPHGIL LDKNCSTPGK  480
DSFTTATVSG GAGTTDGENG SALKEESASG IGYDKVNRVT NKIDRDARPQ IGVLRHKKDL  540
KADSVRQNND MEVDQKIGDD VEKESKVLRH FRAALIDFVR DMLKPTWREG HLSKDAHNTI  600
VKKTVEKVLS TLQPHQIPAT VESIKQYLSS SQPKMAKLVE GYISKHGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0430.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437338.10.0protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A2K1YG000.0A0A2K1YG00_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-34C3H family protein