PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0032s0430.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 672aa MW: 73988.5 Da PI: 8.1424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 175 | 194 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H SapurV1A.0032s0430.4.p 175 ICDFFSK-GWCIRGSSCRFLH 194 8******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16131 | 6.4E-7 | 140 | 204 | IPR032297 | Torus domain |
PROSITE profile | PS50103 | 14.596 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 170 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0062 | 170 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 175 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 672 aa Download sequence Send to blast |
MSELKEDSVN NFKWCGPLDR PLRLHKEKSC VNYADSRSPK LSKHLVFAQK NGTLECAVNK 60 TDADAHTIKN RKGCSEAFGN SKTHLGNSSE ALAVETAHPF VITGMEVDAV LSMRNCLGQG 120 VNIVMGSKEE HKPVDVKSED TKEQKASRLA ASGTRARSIS PSTELRDGNK RAAVICDFFS 180 KGWCIRGSSC RFLHTTNKAD NISQQSGVDE VATREDPFDE GVRNILETPK FPHFPDPVAS 240 STGKEATFSS HFSPERLPPL EHKENQRLHQ LDDKHKLSPR QREGIPRNAK HFSSSKDDPG 300 FSSSFKDVGI ESFRQHWPGT DYGSYSSLIN RGSLFSFSST FDLSLLGSQK LPDGDCASRS 360 SSLLRSASAF SGSEPESLSL AGVPRDRLRL AEHKTKISSN DWEPSVPFRP SFFITPEMIS 420 SAGSKYDPLR DSFDLPNIGD KSFEFSFFSL GASISNTSQQ PIYDSLSNQN FDTEFNGEKS 480 AISSHDKPHG ILLDKNCSTP GKDSFTTATV SGGAGTTDGE NGSALKEESA SGIGYDKVNR 540 VTNKIDRDAR PQIGVLRHKK DLKADSVRQN NDMEVDQKIG DDVEKESKVL RHFRAALIDF 600 VRDMLKPTWR EGHLSKDAHN TIVKKTVEKV LSTLQPHQIP ATVESIKQYL SSSQPKMAKL 660 VEGYISKHGK S* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0032s0430.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437338.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X2 | ||||
TrEMBL | A0A2K1YG00 | 0.0 | A0A2K1YG00_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-34 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0032s0430.4.p |