PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0430.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 796aa    MW: 87826 Da    PI: 5.9415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0430.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08299318525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             +C+ff++ G+C +G++C+F H
  SapurV1A.0032s0430.2.p 299 ICDFFSK-GWCIRGSSCRFLH 318
                             8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161317.8E-7264328IPR032297Torus domain
SMARTSM003560.0062294320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596294321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6294319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4299319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MPQISVANST NRNQKRRKKK TEPGALSPMP ASAAATGDDD EDLALPSSNP PLAQISDSDM  60
DIDNDDYEEE EDPEEEVGGR DNDDDDDDDD EEIKVEEEEV DQRRNDSRQH TVSVRQLGSH  120
STREMSELKE DSVNNFKWCG PLDRPLRLHK EKSCVNYADS RSPKLSKHLV FAQKNGTLEC  180
AVNKTDADAH TIKNRKGCSE AFGNSKTHLG NSSEALAVET AHPFVITGME VDAVLSMRNC  240
LGQGVNIVMG SKEEHKPVDV KSEDTKEQKA SRLAASGTRA RSISPSTELR DGNKRAAVIC  300
DFFSKGWCIR GSSCRFLHTT NKADNISQQS GVDEVATRED PFDEGVRNIL ETPKFPHFPD  360
PVASSTGKEA TFSSHFSPER LPPLEHKENQ RLHQLDDKHK LSPRQREGIP RNAKHFSSSK  420
DDPGFSSSFK DVGIESFRQH WPGTDYGSYS SLINRGSLFS FSSTFDLSLL GSQKLPDGDC  480
ASRSSSLLRS ASAFSGSEPE SLSLAGVPRD RLRLAEHKTK ISSNDWEPSV PFRPSFFITP  540
EMISSAGSKY DPLRDSFDLP NIGDKSFEFS FFSLGASISN TSQQPIYDSL SNQNFDTEFN  600
GEKSAISSHD KPHGILLDKN CSTPGKDSFT TATVSGGAGT TDGENGSALK EESASGIGYD  660
KVNRVTNKID RDARPQIGVL RHKKDLKADS VRQNNDMEVD QKIGDDVEKE SKVLRHFRAA  720
LIDFVRDMLK PTWREGHLSK DAHNTIVKKT VEKVLSTLQP HQIPATVESI KQYLSSSQPK  780
MAKLVEGYIS KHGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0430.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437338.10.0protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A2K1YG000.0A0A2K1YG00_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-34C3H family protein